Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GQ588_RS02585 Genome accession   NZ_CP046996
Coordinates   522852..524192 (+) Length   446 a.a.
NCBI ID   WP_019225188.1    Uniprot ID   A0A1C2Y1Z7
Organism   Dehalobacter restrictus strain 12DCA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 517852..529192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ588_RS02565 (GQ588_02560) - 518247..518720 (+) 474 WP_019225184.1 CtsR family transcriptional regulator -
  GQ588_RS02570 (GQ588_02565) - 518735..519259 (+) 525 WP_019225185.1 UvrB/UvrC motif-containing protein -
  GQ588_RS02575 (GQ588_02570) - 519256..520323 (+) 1068 WP_019225186.1 protein arginine kinase -
  GQ588_RS02580 (GQ588_02575) - 520355..522838 (+) 2484 WP_019225187.1 ATP-dependent Clp protease ATP-binding subunit -
  GQ588_RS02585 (GQ588_02580) radA 522852..524192 (+) 1341 WP_019225188.1 DNA repair protein RadA Machinery gene
  GQ588_RS02590 (GQ588_02585) - 524346..524738 (-) 393 WP_019225189.1 hypothetical protein -
  GQ588_RS02595 (GQ588_02590) - 525009..526175 (+) 1167 WP_019225190.1 PIN/TRAM domain-containing protein -
  GQ588_RS15205 (GQ588_02595) ispD 526153..527340 (+) 1188 WP_019225191.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GQ588_RS02605 (GQ588_02600) gltX 527448..528905 (+) 1458 WP_019225192.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48840.18 Da        Isoelectric Point: 5.6956

>NTDB_id=409797 GQ588_RS02585 WP_019225188.1 522852..524192(+) (radA) [Dehalobacter restrictus strain 12DCA]
MAGPKTKFYCRECGQESARWLGRCPGCGEWNTLIEERVEKSKPTEHRGIVQAIPLTEIQTMEGQRLDTGSPELNRVFGGG
VVEGSFVLLSGEPGIGKSTLFLQMAEYLSRKENVLYVSGEESARQIKLRADRMELSSSRVHILADNSLEAVRSEVLNKGY
KVVFIDSIQTMLLEDVQSAPGSVSQVREGASFLLKLAKENEITVFLAGHITKEGAIAGPRVLEHMVDTVLYFEGDQHHIF
RLLRAVKNRFGPANEIGVFEMRGCGLADVTNPSMFFMGDHTQVSAGSGVAVVMEGTRPLLVEVQALVTSSIFAPPRRTVN
GMDYHRLLMLLAVLDKRAGYAFGTRDVFVNIAGGLDVDEPAADLAVIASVMSGIKDQPLGNMALIGELGLTGEIRGVSHI
EQRIREAEKFGFQNCLVPKVNADSIGKTDCRIIPVKNIEEVLDFLF

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=409797 GQ588_RS02585 WP_019225188.1 522852..524192(+) (radA) [Dehalobacter restrictus strain 12DCA]
TTGGCAGGTCCGAAGACGAAGTTCTATTGCCGGGAATGCGGGCAGGAAAGCGCGAGATGGCTTGGAAGGTGTCCCGGATG
CGGTGAATGGAATACACTGATTGAGGAGCGCGTAGAAAAATCCAAACCTACAGAACACAGAGGGATCGTTCAGGCGATCC
CTCTGACTGAAATCCAAACGATGGAAGGGCAGAGACTTGATACCGGAAGTCCGGAACTTAACCGGGTTTTCGGGGGAGGG
GTTGTCGAAGGGTCCTTTGTTCTATTAAGCGGGGAGCCCGGGATTGGCAAATCCACTTTGTTTCTGCAAATGGCAGAATA
TCTTTCCCGGAAGGAAAATGTGCTTTATGTGTCGGGAGAGGAATCTGCCCGGCAAATCAAACTCAGGGCTGACAGAATGG
AGCTTTCTTCTTCCCGGGTACATATACTCGCCGATAATTCCCTGGAAGCAGTACGTTCGGAGGTGCTGAACAAAGGCTAT
AAAGTCGTTTTTATTGATTCGATCCAGACAATGCTGCTCGAAGACGTTCAGTCTGCACCCGGAAGCGTCAGCCAGGTAAG
GGAAGGGGCTTCTTTTTTGCTGAAACTGGCCAAAGAAAATGAGATTACGGTTTTCCTGGCCGGCCATATTACAAAGGAGG
GTGCGATTGCCGGACCCAGGGTTCTGGAGCACATGGTCGATACGGTCCTGTATTTTGAAGGAGATCAGCACCATATTTTC
CGTCTGCTGCGGGCAGTTAAAAACCGTTTTGGTCCGGCCAACGAAATTGGGGTATTTGAGATGAGAGGCTGCGGTCTAGC
TGATGTTACAAATCCCTCCATGTTTTTTATGGGCGATCATACACAGGTATCTGCTGGTTCCGGGGTGGCTGTCGTGATGG
AAGGAACAAGGCCGCTCTTAGTGGAAGTCCAGGCTTTGGTAACATCGTCCATCTTTGCGCCGCCGAGAAGAACCGTAAAC
GGGATGGATTACCACCGCCTGCTGATGCTTCTGGCAGTCCTGGACAAACGAGCCGGGTACGCTTTTGGCACCCGGGATGT
TTTTGTCAATATTGCCGGGGGTCTCGATGTGGATGAACCGGCAGCGGATCTTGCCGTTATTGCCTCTGTGATGTCGGGAA
TTAAAGATCAGCCGCTTGGAAATATGGCTTTAATCGGGGAACTCGGTTTGACCGGAGAAATTAGAGGGGTTTCTCATATT
GAGCAGCGGATCAGAGAAGCGGAAAAATTTGGTTTCCAAAATTGCCTGGTACCAAAAGTCAATGCAGACAGTATCGGGAA
GACCGATTGCCGAATCATTCCGGTTAAGAACATTGAGGAAGTACTGGATTTTCTTTTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-214)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2Y1Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.552

100

0.513
  radA Streptococcus mitis NCTC 12261

48.59

100

0.502
  radA Streptococcus pneumoniae Rx1

48.59

100

0.502
  radA Streptococcus pneumoniae D39

48.59

100

0.502
  radA Streptococcus pneumoniae R6

48.59

100

0.502
  radA Streptococcus pneumoniae TIGR4

48.59

100

0.502
  radA Streptococcus mitis SK321

48.59

100

0.502

Multiple sequence alignment