Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   GQR42_RS01450 Genome accession   NZ_CP046973
Coordinates   300105..303218 (+) Length   1037 a.a.
NCBI ID   WP_158198635.1    Uniprot ID   -
Organism   Microcystis aeruginosa FD4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295105..308218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR42_RS01425 (GQR42_01440) - 295158..295526 (-) 369 WP_158198631.1 2Fe-2S iron-sulfur cluster-binding protein -
  GQR42_RS01430 (GQR42_01445) - 295679..297928 (-) 2250 WP_158198632.1 hypothetical protein -
  GQR42_RS01435 (GQR42_01450) - 297925..298866 (-) 942 WP_158198633.1 homogentisate phytyltransferase -
  GQR42_RS01445 (GQR42_01460) - 299336..299998 (-) 663 WP_158198634.1 class I SAM-dependent methyltransferase -
  GQR42_RS01450 (GQR42_01465) pilL-C 300105..303218 (+) 3114 WP_158198635.1 hybrid sensor histidine kinase/response regulator Machinery gene
  GQR42_RS01455 (GQR42_01470) - 303231..303629 (-) 399 WP_158198636.1 hypothetical protein -
  GQR42_RS28185 - 303654..303941 (-) 288 WP_233271216.1 hypothetical protein -
  GQR42_RS01465 (GQR42_01480) - 304354..304960 (+) 607 Protein_273 RNA-guided endonuclease InsQ/TnpB family protein -
  GQR42_RS01475 (GQR42_01490) - 305728..306807 (+) 1080 WP_158198637.1 IS630 family transposase -
  GQR42_RS01480 (GQR42_01495) - 306906..308201 (-) 1296 WP_158198638.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 1037 a.a.        Molecular weight: 114541.94 Da        Isoelectric Point: 4.6496

>NTDB_id=409763 GQR42_RS01450 WP_158198635.1 300105..303218(+) (pilL-C) [Microcystis aeruginosa FD4]
MMKPDSDHLFNEDLEQLLESLEDKDTDGNETLDELSFLWEQSDSPAAKSGVSFGQTPSSLPSERELEELFGGSINWEDAP
SNDLHSTRGTSPKSEPEDGDDLASLLLEKAVVLDSEAIITISHPNFYDSLEDLEAFLEKPTPPGQSPLPDIFESLESLLS
ESTAADWVGAAEHLQRLESREIALESPLEAEFKDLEKLIEETNQVMAATPAASFSPSLGLNNLRPRVSKAFEQTMRVPIK
QLDNLSNLIGELVVKRNRIEEEQERLRLFLDNLLNQVQNLSDVGSRMQDLYERTLLEGALLASRNPSGAIGYGRVKGENQ
GDSAMTGELDALEIDHFTDFHLLSQEMIELIVRVRESASDIQFVVDETDRVTRSLRQATTQLQEGMTKSRMVPFSQTADR
LPRAIRDISLKLHKQAKLKVEGGDVLIDKMILEHLNSPMTHLVNNAITHGIESPQERRAKGKPAHGKISVRAFLQGNQTV
ITVGDDGAGIDADRVKRKALEKGLIGDREAQHLSPQEVYELLFHPGFSTKDQADDFAGRGVGLDVVRTSLIDVRGTVTID
SVLGQGTTFTIRLPLTVSICKALCCVSNHARIGFSMDGVEDMKDFRSGDIHRDREGRRCVFWQNTLLPFQPLSELLSHNR
QLSRGSFYTSKQEEDSFSIVILRGGNNLLAVQVDQVIGEQEIVIKQIEGPIPKTAGIAGATVLGDGTVMPIGDVLELIDI
ARGRLRTDNGSLWRQPAPPVAVETSQKSEAMVLIVDDSITVRELLSLSFSKAGYLVEQARDGQEAWEKLRGGLPCDIVFC
DIEMPRMNGLELLYNLQKDPRLAAIPVALLTSRGAERHRKVAATLGASGYFTKPYTERDLLSAAERMIAGEVLLANSIKA
TSNRPLSSDKTIIDSNLPNFWEQSSPLVLIVDDSVMVREMLAISFVKAGYRIEQARDGLEAWEKLRAGLACDLILCDIEM
PRLNGLELLSRLQRDEQLQGIPVAMITSRGAQKMQHLAAAKGAKGYFVKPYIEDVLLSAAQRLIAGEVLIQKENSVD

Nucleotide


Download         Length: 3114 bp        

>NTDB_id=409763 GQR42_RS01450 WP_158198635.1 300105..303218(+) (pilL-C) [Microcystis aeruginosa FD4]
ATGATGAAACCCGACTCGGATCATCTCTTTAACGAAGATCTCGAACAGTTGTTAGAGAGTTTAGAAGACAAAGACACCGA
CGGTAATGAGACTCTAGACGAACTCAGCTTTTTATGGGAGCAGAGTGACTCTCCGGCGGCCAAGTCAGGGGTCTCTTTTG
GCCAAACCCCGTCTTCCTTGCCCTCGGAAAGGGAATTAGAGGAACTTTTTGGCGGTAGTATCAATTGGGAAGATGCCCCC
AGTAATGATCTTCATTCTACCCGTGGAACCTCTCCAAAGTCAGAACCGGAAGATGGGGATGATCTCGCATCGCTGCTGCT
AGAAAAGGCGGTGGTCTTGGACTCAGAAGCAATTATAACCATCAGCCACCCCAATTTTTACGACAGCCTCGAAGACTTAG
AAGCTTTTCTGGAAAAACCCACCCCACCAGGGCAATCGCCACTACCAGACATCTTTGAATCCCTAGAGTCCCTTCTCTCG
GAATCCACAGCAGCGGACTGGGTGGGTGCGGCGGAACATCTCCAACGGTTAGAATCACGGGAAATTGCCCTGGAAAGCCC
CCTAGAGGCTGAATTCAAGGATTTAGAAAAACTCATCGAAGAAACCAATCAGGTGATGGCAGCAACTCCGGCGGCCAGTT
TCAGTCCATCGCTAGGGTTAAATAACCTGCGTCCCCGTGTCAGTAAAGCTTTTGAACAGACGATGCGGGTGCCGATCAAA
CAATTGGATAACCTCAGCAATCTGATCGGAGAACTGGTGGTTAAACGCAATCGCATTGAAGAGGAACAGGAGCGCCTGCG
TCTCTTTTTGGATAATTTGCTTAACCAAGTTCAAAATCTCAGCGATGTGGGCAGTCGGATGCAGGATCTCTATGAAAGAA
CCCTCCTAGAAGGGGCTTTACTGGCTAGTCGCAATCCCAGCGGTGCCATCGGTTACGGTAGAGTTAAGGGAGAAAATCAG
GGCGATTCGGCTATGACCGGGGAACTAGATGCCCTAGAGATCGACCATTTTACCGATTTCCATTTATTATCCCAAGAGAT
GATCGAATTGATCGTGCGCGTGCGAGAATCGGCCTCTGATATTCAATTTGTCGTCGATGAAACCGATCGGGTGACGCGCA
GTCTGCGACAGGCTACCACCCAACTACAGGAAGGGATGACCAAATCGCGCATGGTTCCCTTTAGTCAAACTGCCGATCGC
CTACCCCGGGCAATTCGCGATATTTCCCTGAAACTACATAAACAAGCCAAATTAAAAGTGGAAGGGGGTGATGTTCTCAT
CGATAAGATGATCCTCGAACATCTCAATAGTCCCATGACCCATCTGGTCAACAATGCGATCACCCACGGTATTGAATCAC
CCCAAGAACGCAGGGCCAAAGGGAAACCTGCCCACGGTAAGATCTCTGTCCGGGCATTCCTACAGGGAAATCAAACCGTG
ATCACCGTTGGTGATGATGGGGCCGGTATTGATGCTGATCGGGTGAAACGCAAGGCGCTCGAAAAAGGCCTGATCGGCGA
TCGGGAAGCTCAACACCTCAGTCCCCAAGAAGTCTATGAACTTCTCTTTCACCCCGGTTTTAGTACCAAAGATCAGGCCG
ATGATTTTGCCGGTCGTGGGGTGGGTTTAGATGTGGTGCGTACCAGTTTAATCGATGTGCGCGGGACTGTTACTATTGAC
TCGGTACTGGGCCAAGGAACCACTTTTACCATCCGTTTACCCCTAACCGTGAGCATCTGTAAGGCCCTCTGTTGTGTTAG
TAATCATGCGCGCATCGGTTTCTCCATGGACGGAGTGGAAGATATGAAGGATTTCCGGTCTGGCGATATCCATCGGGATC
GGGAGGGACGGCGCTGCGTTTTCTGGCAAAATACTTTACTGCCCTTCCAACCCTTGAGCGAATTGCTTTCCCATAATCGG
CAACTAAGTCGCGGTAGTTTTTACACCAGCAAACAGGAGGAAGACTCTTTTTCGATCGTGATCCTGCGCGGTGGTAATAA
TCTCCTAGCGGTACAGGTGGATCAAGTGATCGGGGAACAGGAGATCGTGATCAAACAGATCGAAGGACCGATTCCGAAAA
CGGCTGGGATTGCTGGGGCGACGGTTTTAGGCGATGGTACGGTGATGCCGATCGGCGATGTGTTAGAGTTAATCGACATC
GCCAGGGGTCGTCTGCGTACCGATAACGGTAGTCTTTGGCGCCAACCTGCCCCCCCCGTAGCGGTGGAAACTAGCCAAAA
ATCGGAGGCTATGGTTCTGATTGTCGATGATTCGATTACTGTCCGTGAATTGCTCTCTTTAAGCTTTAGTAAAGCCGGTT
ATCTTGTGGAACAGGCCCGGGATGGTCAAGAAGCTTGGGAAAAATTACGCGGTGGTTTGCCCTGTGATATCGTTTTCTGC
GATATCGAGATGCCCCGCATGAATGGCCTAGAATTACTGTATAATTTGCAAAAAGACCCCCGATTAGCGGCGATTCCCGT
GGCTTTATTGACTTCTCGGGGAGCGGAACGTCATCGCAAGGTGGCGGCGACATTAGGAGCTAGTGGTTATTTTACCAAGC
CCTACACGGAAAGAGATTTACTCTCGGCGGCTGAAAGAATGATTGCAGGGGAAGTGTTACTAGCTAATAGTATTAAAGCG
ACTTCTAATCGGCCTTTATCCTCCGATAAAACGATTATTGACAGTAATCTTCCTAATTTCTGGGAACAATCGAGTCCTCT
GGTGTTGATTGTTGATGATTCGGTAATGGTGCGGGAAATGTTAGCGATTTCTTTTGTTAAAGCCGGTTATCGCATTGAAC
AGGCCCGGGACGGTTTAGAAGCATGGGAAAAATTACGGGCCGGATTAGCTTGTGATCTGATTCTCTGCGATATCGAAATG
CCTCGTCTGAATGGGTTAGAATTGCTCTCTCGTCTGCAAAGGGATGAACAACTTCAGGGGATACCAGTAGCGATGATTAC
CTCGCGAGGAGCGCAAAAAATGCAGCATCTCGCCGCCGCTAAAGGGGCAAAAGGTTATTTTGTCAAGCCCTATATTGAGG
ATGTGTTACTGTCGGCAGCCCAACGTTTAATCGCTGGTGAGGTATTAATCCAAAAAGAAAATTCCGTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(752-864)

Response regulator receiver domain (Response_reg)

(908-1019)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(233-292)

CheW-like domain (CheW)

(583-719)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(439-576)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

64.547

89.489

0.578

Multiple sequence alignment