Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ERJ70_RS19830 Genome accession   NZ_CP046956
Coordinates   4082336..4083709 (+) Length   457 a.a.
NCBI ID   WP_209366408.1    Uniprot ID   -
Organism   Sediminibacillus dalangtanensis strain DP4-553-S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4077336..4088709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERJ70_RS19810 (ERJ70_19690) - 4077554..4078012 (+) 459 WP_209366404.1 CtsR family transcriptional regulator -
  ERJ70_RS19815 (ERJ70_19695) - 4078031..4078582 (+) 552 WP_209366405.1 UvrB/UvrC motif-containing protein -
  ERJ70_RS19820 (ERJ70_19700) - 4078579..4079643 (+) 1065 WP_209366406.1 protein arginine kinase -
  ERJ70_RS19825 (ERJ70_19705) clpC 4079668..4082121 (+) 2454 WP_209366407.1 ATP-dependent protease ATP-binding subunit ClpC -
  ERJ70_RS19830 (ERJ70_19710) radA 4082336..4083709 (+) 1374 WP_209366408.1 DNA repair protein RadA Machinery gene
  ERJ70_RS19835 (ERJ70_19715) disA 4083710..4084786 (+) 1077 WP_209366409.1 DNA integrity scanning diadenylate cyclase DisA -
  ERJ70_RS19840 (ERJ70_19720) - 4085006..4086106 (+) 1101 WP_209366410.1 PIN/TRAM domain-containing protein -
  ERJ70_RS19845 (ERJ70_19725) ispD 4086248..4086925 (+) 678 WP_209366411.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ERJ70_RS19850 (ERJ70_19730) ispF 4086956..4087438 (+) 483 WP_209366412.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50145.41 Da        Isoelectric Point: 7.0907

>NTDB_id=409713 ERJ70_RS19830 WP_209366408.1 4082336..4083709(+) (radA) [Sediminibacillus dalangtanensis strain DP4-553-S]
MAKRKTKYVCQECGYETPKWMGKCPSCHNWNTFVEEMEASSSTRHTFQVQSGTKSKPEKITAIQSEEEPRVTTKMPEFNR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVSSQLARKQMNVLYISGEESARQTKLRADRLGVTSDNLYVLAETNLLDISNQ
IEQLNPSFVVIDSIQTIYREEVTSAPGSVSQVRECTSELMRIAKSKGIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFEG
ERHHTFRILRGVKNRFGSTNEMGIFEMKEEGLREVNNPSEIFLEERSQGAAGSTVVASMEGSRPVLVEIQALISPTSFGN
PRRMATGIDHNRVPLLMAVLEKRVGLMLQNQDAYVKVAGGVKLDEPAIDLAVAVSIASSFRDQVSRPDDVLIGEVGLTGE
VRRVARIDQRVQEAAKLGFQRAIIPAKNLDGWTTPNNIEIIGVNTVQEALKVTLGGN

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=409713 ERJ70_RS19830 WP_209366408.1 4082336..4083709(+) (radA) [Sediminibacillus dalangtanensis strain DP4-553-S]
TTGGCAAAAAGAAAGACAAAGTATGTTTGTCAGGAATGTGGGTACGAAACACCAAAGTGGATGGGGAAATGTCCCAGCTG
TCATAATTGGAATACTTTTGTGGAGGAGATGGAAGCTTCTTCTTCCACGAGGCACACATTTCAAGTACAATCTGGAACCA
AATCAAAACCAGAAAAAATTACTGCTATCCAGTCAGAAGAAGAACCGCGGGTTACAACGAAAATGCCGGAATTCAACCGG
GTGCTTGGCGGAGGAATTGTCCCTGGCTCGTTAGTCCTAATTGGCGGGGATCCAGGAATCGGGAAATCGACCCTCCTATT
GCAGGTATCTTCCCAACTGGCAAGAAAACAAATGAATGTATTGTATATATCGGGTGAGGAATCGGCTCGCCAGACAAAGC
TGCGGGCAGACCGTCTCGGCGTAACATCGGACAACCTTTACGTGCTGGCCGAAACGAATTTACTGGATATATCCAATCAA
ATCGAGCAATTGAACCCGTCCTTTGTGGTCATTGATTCGATTCAGACCATTTATCGGGAGGAAGTCACCAGTGCCCCCGG
TAGTGTTTCACAAGTGCGGGAATGTACGAGCGAACTCATGCGTATAGCTAAGAGTAAAGGAATACCTATTTTCATAGTCG
GCCATGTCACCAAAGAGGGATCAATAGCGGGTCCGAGGCTCCTTGAGCATATGGTGGACGCTGTCCTTTACTTTGAAGGG
GAACGTCATCATACTTTTCGTATCTTAAGAGGGGTGAAAAACCGCTTTGGAAGCACGAATGAAATGGGTATCTTTGAAAT
GAAAGAAGAAGGCTTGCGGGAAGTAAACAATCCATCGGAAATTTTTCTCGAAGAACGCTCGCAGGGAGCAGCAGGCTCCA
CCGTTGTTGCTTCCATGGAAGGAAGCCGGCCGGTACTGGTGGAAATCCAAGCACTGATATCTCCCACCAGCTTTGGTAAT
CCAAGGCGAATGGCTACAGGTATCGATCACAATCGCGTCCCGCTTTTAATGGCTGTTCTAGAAAAACGAGTCGGTCTGAT
GCTGCAAAACCAGGATGCCTATGTGAAGGTTGCTGGAGGGGTGAAATTGGATGAACCCGCCATTGACCTGGCAGTTGCTG
TTAGTATTGCATCCAGCTTCCGCGACCAGGTTTCCAGGCCGGATGACGTGTTGATCGGCGAGGTGGGACTGACCGGCGAA
GTTCGAAGGGTAGCGAGAATTGACCAAAGAGTCCAGGAGGCAGCGAAGCTTGGGTTCCAGCGGGCAATAATTCCAGCGAA
AAATCTTGATGGATGGACGACTCCGAATAATATTGAAATCATCGGGGTGAACACGGTTCAAGAAGCCTTAAAAGTGACGC
TGGGAGGAAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(352-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.328

100

0.755
  radA Streptococcus pneumoniae Rx1

62.084

98.687

0.613
  radA Streptococcus pneumoniae D39

62.084

98.687

0.613
  radA Streptococcus pneumoniae R6

62.084

98.687

0.613
  radA Streptococcus pneumoniae TIGR4

62.084

98.687

0.613
  radA Streptococcus mitis NCTC 12261

62.084

98.687

0.613
  radA Streptococcus mitis SK321

62.084

98.687

0.613

Multiple sequence alignment