Detailed information NTG0409712

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MS10860_RS14750
• Genome accession: NZ_CP059332
• Coordinates: 2961411..2962403 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS10860
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2956411..2967403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MS10860_RS14730 (MS10860_2872)	ygbM	2957042..2957818 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
MS10860_RS14735 (MS10860_2873)	ygbN	2957907..2959271 (+)	1365	WP_000104433.1	GntP family transporter	-
MS10860_RS14740 (MS10860_2874)	-	2959414..2960457 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
MS10860_RS14745 (MS10860_2875)	-	2960682..2961233 (+)	552	WP_001179442.1	flavodoxin family protein	-
MS10860_RS14750 (MS10860_2876)	rpoS	2961411..2962403 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MS10860_RS14755 (MS10860_2877)	nlpD	2962466..2963560 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
MS10860_RS14760 (MS10860_2878)	pcm	2963745..2964371 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
MS10860_RS14765 (MS10860_2879)	surE	2964365..2965126 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MS10860_RS14770 (MS10860_2880)	truD	2965107..2966156 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
MS10860_RS14775 (MS10860_2881)	ispF	2966153..2966632 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MS10860_RS14780 (MS10860_2882)	ispD	2966632..2967342 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=409712 MS10860_RS14750 WP_000081550.1 2961411..2962403(-) (rpoS) [Escherichia coli strain MS10860]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=409712 MS10860_RS14750 WP_000081550.1 2961411..2962403(-) (rpoS) [Escherichia coli strain MS10860]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715