Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ERJ70_RS11090 Genome accession   NZ_CP046956
Coordinates   2200471..2202204 (-) Length   577 a.a.
NCBI ID   WP_209364952.1    Uniprot ID   -
Organism   Sediminibacillus dalangtanensis strain DP4-553-S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2195471..2207204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERJ70_RS11075 (ERJ70_10995) - 2196103..2197455 (-) 1353 WP_209364949.1 aspartate kinase -
  ERJ70_RS11080 (ERJ70_11000) spo0A 2197914..2198702 (-) 789 WP_209364950.1 sporulation transcription factor Spo0A -
  ERJ70_RS11085 (ERJ70_11005) spoIVB 2198998..2200275 (-) 1278 WP_209364951.1 SpoIVB peptidase -
  ERJ70_RS11090 (ERJ70_11010) recN 2200471..2202204 (-) 1734 WP_209364952.1 DNA repair protein RecN Machinery gene
  ERJ70_RS11095 (ERJ70_11015) ahrC 2202239..2202688 (-) 450 WP_026569998.1 transcriptional regulator AhrC/ArgR -
  ERJ70_RS11100 (ERJ70_11020) - 2202773..2203600 (-) 828 WP_209369320.1 TlyA family RNA methyltransferase -
  ERJ70_RS11105 (ERJ70_11025) dxs 2203604..2205496 (-) 1893 WP_209369322.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ERJ70_RS11110 (ERJ70_11030) - 2205680..2206255 (-) 576 WP_209364953.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 65416.06 Da        Isoelectric Point: 4.6520

>NTDB_id=409685 ERJ70_RS11090 WP_209364952.1 2200471..2202204(-) (recN) [Sediminibacillus dalangtanensis strain DP4-553-S]
MLTELSIKDFAIIDEISITFNEGLTVLTGETGAGKSIIIDAVQLLTGGRGSVEFVRYGAKKADIEGLFIIDDLHHPIFEK
GRHFGVDINEDGMIVLHRTITANGKSICRVNGKLVTLAILKEFGKTLIDIHSQHETQSLMEVDRHIELLDLYVRDELEQV
KSDYLRLFEKFQALRKRYRELSENEQEMVQRLDLLEFQLKEIQEAELSPLEDETLSEERDKLNNYEKIYQGIHDAYNALY
GEQKGLDWLSLALNGLESASEYDEEAASKKEEFSNHYYVLEEFTFDLRNFLDSMEFDPERLNVIESRLNEINRLKKKYGQ
TVTEILEYAAEVEDEIDQITNRESHLSKLQNQIAELGEDALLEARHMHDIRKKAAETLSDSIHKELKDLYLEKAAFGVDI
QMRRGKEGDPQLEGIPVSMQANGFDLVKFLITTNPGEPLKEINKVASGGELSRIMLALKKIFSKHQGVTSVIFDEVDTGV
SGRVAQAIAEKIHGIATGSQVLCISHLPQVASMADTHLLIEKHVSGERTSTSMVELDTESSVEEISRMITGAEMTETTKE
HARELIKLAEKFKKDQE

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=409685 ERJ70_RS11090 WP_209364952.1 2200471..2202204(-) (recN) [Sediminibacillus dalangtanensis strain DP4-553-S]
TTGTTAACTGAATTGTCTATCAAGGATTTCGCAATTATTGATGAAATATCGATTACATTCAATGAAGGCTTGACTGTGTT
AACAGGCGAAACCGGGGCAGGCAAATCGATCATTATCGATGCCGTCCAATTATTGACTGGTGGTAGAGGGTCGGTAGAGT
TTGTCAGGTATGGAGCTAAAAAAGCGGATATAGAGGGATTGTTCATTATTGATGATCTCCATCATCCTATATTTGAAAAA
GGGCGCCATTTTGGAGTAGATATCAATGAAGACGGCATGATTGTCCTTCATCGTACGATTACAGCTAATGGAAAAAGTAT
TTGCAGGGTGAACGGCAAATTAGTCACGCTGGCGATATTGAAAGAATTCGGTAAAACGCTCATTGACATACACAGTCAGC
ATGAGACACAGTCTCTTATGGAAGTGGACAGGCATATTGAATTATTGGATCTATATGTCAGAGATGAACTGGAACAAGTA
AAATCAGATTATCTCCGTTTGTTTGAAAAATTTCAGGCTTTAAGGAAGCGTTATCGCGAACTCAGCGAGAATGAACAGGA
AATGGTTCAGCGGCTCGATTTGCTTGAATTTCAGTTAAAGGAAATTCAAGAGGCAGAATTGTCCCCCTTGGAAGATGAAA
CGTTAAGTGAAGAACGGGATAAGCTGAACAATTATGAAAAAATATATCAGGGAATTCATGATGCTTATAACGCGTTGTAT
GGAGAGCAGAAGGGGCTTGACTGGCTTTCGCTTGCATTGAACGGCTTGGAAAGTGCGAGTGAATATGATGAAGAAGCAGC
TTCTAAAAAAGAAGAATTCTCGAATCACTATTATGTACTGGAGGAATTTACGTTTGATTTGCGTAATTTCCTCGATTCCA
TGGAATTTGATCCGGAACGGCTGAACGTGATAGAAAGCCGGTTAAATGAGATCAACCGTTTAAAAAAGAAATATGGCCAG
ACAGTAACGGAAATTTTAGAATACGCAGCGGAAGTCGAAGATGAGATTGATCAAATCACCAATCGCGAATCCCATTTATC
CAAGCTGCAAAATCAAATTGCAGAACTTGGAGAAGATGCGCTTTTGGAAGCGAGGCATATGCATGATATCCGAAAAAAGG
CAGCGGAAACCTTGTCTGATTCCATCCACAAAGAATTGAAGGATCTCTATTTAGAAAAAGCCGCATTCGGTGTCGATATA
CAAATGAGACGCGGAAAAGAAGGAGATCCACAGTTGGAAGGAATTCCTGTTAGTATGCAGGCCAATGGTTTCGACCTGGT
GAAATTTTTGATCACTACCAATCCCGGAGAGCCACTAAAAGAAATCAATAAAGTTGCCTCAGGCGGAGAGCTATCCAGAA
TCATGTTAGCCCTGAAGAAAATTTTTTCTAAACACCAAGGGGTGACCAGTGTCATCTTTGACGAGGTTGATACCGGGGTA
AGCGGAAGGGTCGCACAGGCGATAGCTGAAAAAATTCATGGGATTGCAACCGGTTCTCAGGTTTTATGTATTTCCCACCT
CCCACAGGTTGCTTCGATGGCGGACACCCATCTTTTAATTGAAAAGCATGTGTCAGGTGAAAGGACAAGCACCTCTATGG
TGGAACTAGATACGGAATCTTCCGTGGAAGAGATCAGCCGGATGATCACCGGAGCAGAAATGACGGAAACGACAAAGGAA
CATGCCAGAGAGTTGATAAAGCTTGCAGAAAAATTCAAAAAGGATCAAGAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.652

99.653

0.555

Multiple sequence alignment