Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H0529_RS06490 Genome accession   NZ_CP059300
Coordinates   1353174..1353809 (-) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AC1633     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348174..1358809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0529_RS06465 (H0529_06465) - 1348229..1349209 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  H0529_RS06470 (H0529_06470) kdsB 1349221..1349982 (-) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0529_RS06475 (H0529_06475) lpxK 1349993..1351003 (-) 1011 WP_000050451.1 tetraacyldisaccharide 4'-kinase -
  H0529_RS06480 (H0529_06480) msbA 1351006..1352733 (-) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  H0529_RS06485 (H0529_06485) - 1352730..1353158 (-) 429 WP_000669680.1 biopolymer transporter ExbD -
  H0529_RS06490 (H0529_06490) exbB 1353174..1353809 (-) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H0529_RS06495 (H0529_06495) - 1353859..1354746 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  H0529_RS06500 (H0529_06500) - 1354743..1355525 (-) 783 WP_000057212.1 ParA family protein -
  H0529_RS06505 (H0529_06505) rsmG 1355547..1356179 (-) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  H0529_RS06510 (H0529_06510) murU 1356267..1356956 (-) 690 WP_004738901.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  H0529_RS06515 (H0529_06515) - 1356956..1357969 (-) 1014 WP_001096098.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=409614 H0529_RS06490 WP_000264042.1 1353174..1353809(-) (exbB) [Acinetobacter baumannii strain AC1633]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=409614 H0529_RS06490 WP_000264042.1 1353174..1353809(-) (exbB) [Acinetobacter baumannii strain AC1633]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393