Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GQS62_RS07590 Genome accession   NZ_CP046938
Coordinates   1480094..1481464 (-) Length   456 a.a.
NCBI ID   WP_158190851.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain GDIAS001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475094..1486464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS62_RS07570 (GQS62_07565) - 1475390..1475803 (-) 414 WP_023440688.1 Mini-ribonuclease 3 -
  GQS62_RS07575 (GQS62_07570) cysS 1475796..1477208 (-) 1413 WP_158190850.1 cysteine--tRNA ligase -
  GQS62_RS07580 (GQS62_07575) gltX 1477389..1478876 (-) 1488 WP_002833250.1 glutamate--tRNA ligase -
  GQS62_RS07585 (GQS62_07580) - 1478946..1480076 (-) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  GQS62_RS07590 (GQS62_07585) radA 1480094..1481464 (-) 1371 WP_158190851.1 DNA repair protein RadA Machinery gene
  GQS62_RS07595 (GQS62_07590) - 1481564..1482097 (-) 534 WP_002833247.1 dUTP diphosphatase -
  GQS62_RS07600 (GQS62_07595) - 1482234..1482563 (+) 330 WP_002833246.1 GNAT family N-acetyltransferase -
  GQS62_RS07605 (GQS62_07600) rpiA 1482567..1483253 (+) 687 WP_158190852.1 ribose-5-phosphate isomerase RpiA -
  GQS62_RS07610 (GQS62_07605) - 1483323..1484669 (+) 1347 WP_138428647.1 aminopeptidase C -
  GQS62_RS07615 (GQS62_07610) - 1484745..1485125 (-) 381 WP_002833243.1 winged helix-turn-helix transcriptional regulator -
  GQS62_RS07620 (GQS62_07615) - 1485189..1486376 (-) 1188 WP_158190853.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50376.80 Da        Isoelectric Point: 6.7620

>NTDB_id=409563 GQS62_RS07590 WP_158190851.1 1480094..1481464(-) (radA) [Pediococcus pentosaceus strain GDIAS001]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESSSQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=409563 GQS62_RS07590 WP_158190851.1 1480094..1481464(-) (radA) [Pediococcus pentosaceus strain GDIAS001]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGACGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAATTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGAGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGAGTAGTAGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATCGGTAAGTCGACCCTATT
ATTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTTCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAATAGTGAACGTTTTTACTTATACCCTGAAACAGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGATATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCTGAATTAATGCAAATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTTGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTTGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTGATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATTGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGGATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
GAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.593

99.781

0.664
  radA Streptococcus mitis NCTC 12261

66.593

99.781

0.664
  radA Streptococcus mitis SK321

66.593

99.781

0.664
  radA Streptococcus pneumoniae TIGR4

66.593

99.781

0.664
  radA Streptococcus pneumoniae D39

66.593

99.781

0.664
  radA Streptococcus pneumoniae R6

66.593

99.781

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651

Multiple sequence alignment