Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DESKU_RS15550 Genome accession   NC_015573
Coordinates   3167207..3168571 (-) Length   454 a.a.
NCBI ID   WP_013824158.1    Uniprot ID   A0AAU8PCJ1
Organism   Desulfofundulus kuznetsovii DSM 6115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3162207..3173571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESKU_RS15530 (Desku_3151) - 3162764..3164020 (-) 1257 WP_013824154.1 (Fe-S)-binding protein -
  DESKU_RS15535 (Desku_3152) - 3164017..3165408 (-) 1392 WP_013824155.1 FAD-linked oxidase C-terminal domain-containing protein -
  DESKU_RS15540 (Desku_3153) - 3165708..3166103 (+) 396 WP_041283608.1 hypothetical protein -
  DESKU_RS15545 (Desku_3154) disA 3166125..3167210 (-) 1086 WP_013824157.1 DNA integrity scanning diadenylate cyclase DisA -
  DESKU_RS15550 (Desku_3155) radA 3167207..3168571 (-) 1365 WP_013824158.1 DNA repair protein RadA Machinery gene
  DESKU_RS15555 (Desku_3156) - 3168940..3170190 (-) 1251 WP_013824159.1 RNA-guided endonuclease TnpB family protein -
  DESKU_RS19260 (Desku_3157) - 3170093..3170504 (-) 412 Protein_3157 transposase -
  DESKU_RS15560 (Desku_3158) - 3170663..3171082 (-) 420 WP_013824160.1 type II toxin-antitoxin system VapC family toxin -
  DESKU_RS19265 (Desku_3159) - 3171030..3171308 (-) 279 WP_013824161.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  DESKU_RS15565 (Desku_3160) - 3171588..3171878 (+) 291 WP_013824162.1 UPF0175 family protein -
  DESKU_RS15570 (Desku_3161) - 3171856..3172341 (+) 486 WP_013824163.1 DUF3368 domain-containing protein -
  DESKU_RS15575 (Desku_3162) - 3172699..3173163 (-) 465 Protein_3162 transposase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48508.09 Da        Isoelectric Point: 6.3107

>NTDB_id=40956 DESKU_RS15550 WP_013824158.1 3167207..3168571(-) (radA) [Desulfofundulus kuznetsovii DSM 6115]
MASKTRFCCQECGHCTPRWLGRCPECGAWNTLVEEAVAGTKQRPGRVVAPTPLPITQISLDEEERFSTGIGELDRVLGGG
VVPASLILLGGDPGIGKSTLLLQVATSVAGAGRVVLYVTGEESVQQVRLRAFRLGVESSRLYLLAETDIDAVENSIRSLK
PALVIVDSIQTMHKVDFGSAPGSVGQVRECATQLMRLAKETGVAIFLVGHVTKEGLLAGPRVLEHMVDAVLYFEGERHQS
FRILRGVKNRFGSTNEIGVFEMKDDGLVEVANPSSLFMIQHPAGPVAGAVVVPTLEGTRPLLVEIQALVSPTGFGNPRRM
TAGVDYNRVILIMAVLEKRVGLHLGSYDAYVNAVGGVRLVEPAVDLGIAVALASSFRDLPVNCRLAVVGEVGLTGELRPV
TGIEKRVQEAAQLGFTHCLLPRANLGQVDPSRVGTMNVWGAQTLSEALEIALEQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=40956 DESKU_RS15550 WP_013824158.1 3167207..3168571(-) (radA) [Desulfofundulus kuznetsovii DSM 6115]
ATGGCCAGTAAAACCCGCTTTTGCTGCCAGGAATGCGGACACTGCACCCCCCGCTGGCTGGGTCGCTGTCCTGAATGCGG
GGCCTGGAATACCCTGGTGGAGGAGGCGGTTGCCGGGACAAAGCAGCGCCCCGGGCGCGTAGTTGCTCCCACCCCCCTTC
CCATTACTCAGATTTCGCTGGATGAGGAAGAACGCTTTTCCACCGGTATCGGGGAACTGGACCGGGTTCTGGGTGGCGGT
GTTGTGCCTGCCTCCCTAATTTTGTTGGGGGGAGATCCGGGAATCGGCAAATCCACTCTCCTTTTACAGGTAGCCACCAG
TGTAGCCGGTGCTGGCCGGGTGGTGCTTTATGTTACCGGCGAAGAGTCGGTCCAGCAGGTGCGCTTAAGGGCCTTCCGCC
TGGGTGTAGAATCCAGCCGGCTGTACCTTCTGGCGGAAACAGATATAGATGCGGTAGAAAACAGCATCAGGTCCTTGAAA
CCCGCCCTGGTAATCGTGGATTCCATCCAGACCATGCATAAAGTCGATTTTGGTTCGGCTCCGGGCAGTGTGGGACAGGT
GCGGGAGTGCGCCACCCAGTTAATGCGCTTGGCCAAGGAAACGGGAGTAGCCATTTTTCTGGTCGGGCACGTAACAAAAG
AAGGGCTCCTGGCCGGCCCCCGCGTTCTGGAGCATATGGTGGATGCGGTACTTTATTTTGAGGGGGAAAGACACCAATCC
TTCCGCATTTTGCGGGGTGTGAAAAATAGGTTTGGTTCCACCAACGAGATTGGCGTTTTTGAAATGAAAGATGACGGTCT
GGTGGAGGTTGCCAATCCTTCTTCCTTGTTTATGATCCAGCATCCCGCCGGGCCGGTGGCCGGGGCAGTGGTGGTCCCCA
CCCTGGAAGGAACAAGGCCGCTTTTGGTGGAGATACAGGCTCTGGTGTCGCCCACAGGCTTTGGCAATCCCCGGCGCATG
ACGGCGGGGGTGGATTACAACCGCGTAATCCTGATCATGGCTGTGCTGGAAAAGCGGGTCGGCCTGCACCTGGGCAGTTA
TGACGCCTATGTCAACGCGGTGGGAGGGGTGCGCCTGGTAGAGCCGGCGGTGGATCTGGGCATAGCAGTGGCCCTGGCTT
CCAGTTTCCGGGATCTTCCCGTGAACTGCCGCCTGGCGGTGGTGGGGGAAGTAGGCCTGACGGGGGAACTCCGCCCCGTC
ACCGGGATAGAGAAAAGGGTTCAAGAGGCAGCGCAGCTTGGTTTTACCCACTGCCTGCTGCCCCGGGCGAATTTGGGCCA
GGTGGATCCGTCCCGGGTGGGAACCATGAACGTTTGGGGGGCTCAAACGCTGTCCGAAGCCCTTGAAATAGCCCTGGAAC
AATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-215)

Subunit ChlI of Mg-chelatase (ChlI)

(362-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.304

100

0.57
  radA Streptococcus pneumoniae Rx1

53.275

100

0.537
  radA Streptococcus pneumoniae R6

53.275

100

0.537
  radA Streptococcus pneumoniae TIGR4

53.275

100

0.537
  radA Streptococcus pneumoniae D39

53.275

100

0.537
  radA Streptococcus mitis SK321

53.173

100

0.535
  radA Streptococcus mitis NCTC 12261

53.173

100

0.535

Multiple sequence alignment