Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H0481_RS08275 Genome accession   NZ_CP059288
Coordinates   1752699..1754123 (-) Length   474 a.a.
NCBI ID   WP_000132558.1    Uniprot ID   -
Organism   Escherichia coli strain 1506     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747699..1759123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0481_RS08245 (H0481_08245) yeeZ 1747754..1748578 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  H0481_RS08250 (H0481_08250) yeeY 1748624..1749553 (+) 930 WP_181464052.1 LysR substrate-binding domain-containing protein -
  H0481_RS08255 (H0481_08255) yoeI 1749768..1749830 (+) 63 WP_010723108.1 membrane protein YoeI -
  H0481_RS08260 (H0481_08260) plaP 1749820..1751178 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H0481_RS08265 (H0481_08265) tsuA 1751357..1752415 (+) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  H0481_RS08270 (H0481_08270) tsuB 1752429..1752656 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H0481_RS08275 (H0481_08275) sbcB 1752699..1754123 (-) 1425 WP_000132558.1 exodeoxyribonuclease I Machinery gene
  H0481_RS08280 (H0481_08280) - 1754305..1755483 (+) 1179 WP_181464053.1 site-specific integrase -
  H0481_RS08285 (H0481_08285) - 1755464..1755655 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  H0481_RS08290 (H0481_08290) - 1755733..1756077 (-) 345 WP_181464054.1 hypothetical protein -
  H0481_RS08295 (H0481_08295) - 1756185..1756445 (-) 261 WP_032229698.1 hypothetical protein -
  H0481_RS24140 - 1756442..1756747 (-) 306 WP_352229185.1 DUF551 domain-containing protein -
  H0481_RS23865 - 1757192..1757290 (-) 99 Protein_1639 hypothetical protein -
  H0481_RS23870 - 1757495..1757620 (-) 126 Protein_1640 hypothetical protein -
  H0481_RS08305 (H0481_08305) - 1757617..1757982 (-) 366 WP_181464056.1 HNH endonuclease signature motif containing protein -
  H0481_RS08310 (H0481_08310) - 1757984..1758421 (-) 438 WP_181464057.1 ead/Ea22-like family protein -
  H0481_RS08315 (H0481_08315) - 1758418..1758675 (-) 258 WP_089577457.1 DUF4752 family protein -
  H0481_RS08320 (H0481_08320) - 1758672..1759046 (-) 375 WP_181463899.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54355.59 Da        Isoelectric Point: 5.3476

>NTDB_id=409550 H0481_RS08275 WP_000132558.1 1752699..1754123(-) (sbcB) [Escherichia coli strain 1506]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=409550 H0481_RS08275 WP_000132558.1 1752699..1754123(-) (sbcB) [Escherichia coli strain 1506]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586