Detailed information NTG0409537

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H0481_RS04865
• Genome accession: NZ_CP059288
• Coordinates: 1015725..1016717 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1506
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1010725..1021717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0481_RS04835 (H0481_04835)	ispD	1010786..1011496 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H0481_RS04840 (H0481_04840)	ispF	1011496..1011975 (+)	480	WP_113418415.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H0481_RS04845 (H0481_04845)	truD	1011972..1013021 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
H0481_RS04850 (H0481_04850)	surE	1013002..1013763 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H0481_RS04855 (H0481_04855)	pcm	1013757..1014383 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H0481_RS04860 (H0481_04860)	nlpD	1014568..1015662 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H0481_RS04865 (H0481_04865)	rpoS	1015725..1016717 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H0481_RS04870 (H0481_04870)	ygbN	1016811..1018175 (-)	1365	WP_000104441.1	GntP family transporter	-
H0481_RS04875 (H0481_04875)	ygbM	1018264..1019040 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H0481_RS04880 (H0481_04880)	ygbL	1019045..1019683 (-)	639	WP_001278994.1	aldolase	-
H0481_RS04885 (H0481_04885)	otnK	1019680..1020942 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=409537 H0481_RS04865 WP_000081550.1 1015725..1016717(+) (rpoS) [Escherichia coli strain 1506]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=409537 H0481_RS04865 WP_000081550.1 1015725..1016717(+) (rpoS) [Escherichia coli strain 1506]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715