Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H0155_RS08285 Genome accession   NZ_CP059283
Coordinates   1740944..1742368 (-) Length   474 a.a.
NCBI ID   WP_176580561.1    Uniprot ID   -
Organism   Escherichia coli strain SY3626_hybrid     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1735944..1747368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0155_RS08260 (H0155_08260) hisL 1736651..1736701 (-) 51 WP_071594744.1 his operon leader peptide -
  H0155_RS08265 (H0155_08265) - 1736880..1737701 (+) 822 WP_115203819.1 SDR family oxidoreductase -
  H0155_RS08270 (H0155_08270) plaP 1738049..1739407 (+) 1359 WP_115205327.1 putrescine/proton symporter PlaP -
  H0155_RS08275 (H0155_08275) tsuA 1739598..1740653 (+) 1056 WP_176580560.1 thiosulfate utilization transporter TsuA/YeeE -
  H0155_RS08280 (H0155_08280) tsuB 1740666..1740890 (+) 225 WP_001575873.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H0155_RS08285 (H0155_08285) sbcB 1740944..1742368 (-) 1425 WP_176580561.1 exodeoxyribonuclease I Machinery gene
  H0155_RS08290 (H0155_08290) - 1742550..1743728 (+) 1179 WP_025404398.1 site-specific integrase -
  H0155_RS08295 (H0155_08295) - 1743709..1743900 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  H0155_RS08300 (H0155_08300) - 1744060..1744227 (-) 168 WP_001214441.1 DUF2737 family protein -
  H0155_RS08305 (H0155_08305) - 1744238..1744531 (-) 294 WP_176580562.1 phage anti-RecBCD protein -
  H0155_RS08310 (H0155_08310) ssb 1744545..1745051 (-) 507 WP_000168274.1 single-stranded DNA-binding protein -
  H0155_RS08315 (H0155_08315) - 1745052..1745759 (-) 708 WP_000365280.1 Rad52/Rad22 family DNA repair protein -
  H0155_RS08320 (H0155_08320) kil 1746014..1746166 (-) 153 WP_104774782.1 host cell division inhibitory peptide Kil -
  H0155_RS08325 (H0155_08325) - 1746151..1746276 (-) 126 WP_016042219.1 protease FtsH-inhibitory lysogeny factor CIII -
  H0155_RS25420 (H0155_08330) - 1746541..1746597 (-) 57 WP_244591461.1 antirestriction Ral family protein -
  H0155_RS25045 - 1746943..1747026 (-) 84 Protein_1649 antitermination protein N -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54209.61 Da        Isoelectric Point: 5.2321

>NTDB_id=409467 H0155_RS08285 WP_176580561.1 1740944..1742368(-) (sbcB) [Escherichia coli strain SY3626_hybrid]
MIGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHLLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQNRNSRWDLLDVMRACYALRPDGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKAQQPKLFDYLYAYRGKNKLMTLIDVPQMKPLVHVSGMFGAWRG
NTSWIAPLAWHPDNRNAVIMVDLAGDIAPLLELDADTLRERLYTPKAELGDSSPVPIKLVHLNKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKLLRDNPQVREKVVAIFAEAEPFVASDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADP
RIEKLLFNFRARNFPGTLDENEQQRWLEHRRQIFTPEFLQAYAQQLEMLYGQYEGNNEKLSLLKALYQYVQEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=409467 H0155_RS08285 WP_176580561.1 1740944..1742368(-) (sbcB) [Escherichia coli strain SY3626_hybrid]
ATGATAGGCACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCGCTG
ATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTTGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAAAACCGCAATTCGCGCT
GGGATCTGCTTGACGTGATGCGCGCCTGCTATGCCCTGCGCCCGGACGGCATCAACTGGCCGGAAAACGACGACGGTCTA
CCGAGCTTCCGCCTGGAACATCTCACCAAGGCCAACGGTATTGAACACAGTAACGCCCATGATGCGATGGCCGACGTTTA
CGCGACCATCGCCATGGCGAAGCTGGTGAAGGCCCAACAGCCAAAGCTGTTTGATTATCTGTATGCCTACCGGGGCAAAA
ACAAGCTGATGACGCTGATTGACGTCCCGCAGATGAAGCCACTGGTGCATGTCTCGGGAATGTTTGGCGCCTGGCGCGGA
AACACCAGCTGGATTGCGCCGCTGGCCTGGCATCCGGATAACCGTAATGCGGTGATCATGGTCGACCTGGCGGGCGACAT
CGCCCCGCTGCTCGAGCTGGATGCCGATACGCTGCGCGAGCGCCTGTATACGCCGAAGGCCGAGCTCGGCGACAGTTCGC
CGGTGCCGATTAAGCTGGTGCATCTGAATAAGTGCCCGGTGCTGGCGCAGGCCAATACCCTGCGCCCAGAAGACGCTGAC
CGTTTAGGCATTAACCGACAGCACTGCCTGGATAACCTGAAACTGCTGCGCGATAACCCGCAGGTGCGCGAGAAGGTGGT
GGCGATTTTTGCTGAAGCCGAGCCGTTTGTCGCATCGGACAACGTCGACGCCCAGCTTTATAACGGTTTCTTTAGCGACG
CCGACCGCGCGGCGATGAAAATCGTGCTGGAGACCGAGCCGCGCAATCTGCCGGCGCTGGACATTACCTTCGCCGACCCG
CGTATTGAGAAGCTGCTGTTTAACTTCCGCGCGCGCAACTTCCCCGGCACGCTGGATGAAAACGAGCAACAGCGCTGGCT
GGAACACCGTCGGCAGATCTTCACCCCGGAATTTTTACAGGCCTACGCCCAGCAACTGGAGATGTTGTACGGTCAGTATG
AGGGGAATAACGAGAAGCTATCGCTGCTGAAGGCGCTGTATCAGTACGTGCAGGAGATTGTTTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

99.156

0.582