Detailed information NTG0409454

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H0155_RS04830
• Genome accession: NZ_CP059283
• Coordinates: 993224..994216 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SY3626_hybrid
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 988224..999216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0155_RS04800 (H0155_04800)	ispD	988285..988995 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H0155_RS04805 (H0155_04805)	ispF	988995..989474 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H0155_RS04810 (H0155_04810)	truD	989471..990520 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
H0155_RS04815 (H0155_04815)	surE	990501..991262 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H0155_RS04820 (H0155_04820)	pcm	991256..991882 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H0155_RS04825 (H0155_04825)	nlpD	992067..993161 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H0155_RS04830 (H0155_04830)	rpoS	993224..994216 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H0155_RS04835 (H0155_04835)	ygbN	994310..995674 (-)	1365	WP_000104441.1	GntP family transporter	-
H0155_RS04840 (H0155_04840)	ygbM	995763..996539 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H0155_RS04845 (H0155_04845)	ygbL	996544..997182 (-)	639	WP_089513550.1	aldolase	-
H0155_RS04850 (H0155_04850)	otnK	997179..998441 (-)	1263	WP_176580491.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=409454 H0155_RS04830 WP_000081550.1 993224..994216(+) (rpoS) [Escherichia coli strain SY3626_hybrid]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=409454 H0155_RS04830 WP_000081550.1 993224..994216(+) (rpoS) [Escherichia coli strain SY3626_hybrid]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715