Detailed information NTG0409425

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H0272_RS21795
• Genome accession: NZ_CP059281
• Coordinates: 4500638..4501630 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4495638..4506630

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0272_RS21775 (H0272_21775)	ygbM	4496276..4497052 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
H0272_RS21780 (H0272_21780)	ygbN	4497141..4498505 (+)	1365	WP_000104433.1	GntP family transporter	-
H0272_RS21785 (H0272_21785)	-	4498648..4499691 (-)	1044	WP_139507528.1	MBL fold metallo-hydrolase	-
H0272_RS21790 (H0272_21790)	-	4499916..4500467 (+)	552	WP_001179444.1	flavodoxin family protein	-
H0272_RS21795 (H0272_21795)	rpoS	4500638..4501630 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H0272_RS21800 (H0272_21800)	nlpD	4501693..4502787 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
H0272_RS21805 (H0272_21805)	pcm	4502972..4503598 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H0272_RS21810 (H0272_21810)	surE	4503592..4504353 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H0272_RS21815 (H0272_21815)	truD	4504334..4505383 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
H0272_RS21820 (H0272_21820)	ispF	4505380..4505859 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H0272_RS21825 (H0272_21825)	ispD	4505859..4506569 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=409425 H0272_RS21795 WP_000081550.1 4500638..4501630(-) (rpoS) [Escherichia coli strain C9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=409425 H0272_RS21795 WP_000081550.1 4500638..4501630(-) (rpoS) [Escherichia coli strain C9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715