Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GPZ88_RS04070 Genome accession   NZ_CP046919
Coordinates   801158..801880 (+) Length   240 a.a.
NCBI ID   WP_166043532.1    Uniprot ID   A0A6G8HZN1
Organism   Streptococcus ruminicola strain CNU_G2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 796158..806880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS04050 (GPZ88_04010) - 796389..796925 (+) 537 WP_166043525.1 2'-5' RNA ligase family protein -
  GPZ88_RS04055 (GPZ88_04015) - 797023..797349 (+) 327 WP_166043527.1 hypothetical protein -
  GPZ88_RS04060 (GPZ88_04020) treC 797335..798975 (-) 1641 WP_166043529.1 alpha,alpha-phosphotrehalase -
  GPZ88_RS04065 (GPZ88_04025) treP 798987..800962 (-) 1976 Protein_807 PTS system trehalose-specific EIIBC component -
  GPZ88_RS04070 (GPZ88_04030) treR 801158..801880 (+) 723 WP_166043532.1 trehalose operon repressor Regulator
  GPZ88_RS04075 (GPZ88_04035) - 801902..802732 (-) 831 WP_166043533.1 class C sortase -
  GPZ88_RS04080 (GPZ88_04040) - 802894..804330 (-) 1437 WP_166044354.1 isopeptide-forming domain-containing fimbrial protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27666.68 Da        Isoelectric Point: 8.2849

>NTDB_id=409420 GPZ88_RS04070 WP_166043532.1 801158..801880(+) (treR) [Streptococcus ruminicola strain CNU_G2]
MKKYEQVFKKIEQDITSGVYQAGDFLPTENELTQTYQMSRDTIRKALKLLAEAGLIQKIHGSGSQVIKHETIDFPVSQLT
SYKELVDSYGIDSKTNVISIDKLIVDEKLAALTGFKKNSLVWRVIRQRVVDGTASVLDIDYLDKKIVPDMTREIAEQSIY
YYLEKQLHLIIAYAQKEITIDQLNDRDNLLLDIGAEHHVVSVKSKVYLANKQQFQFTESRHKLEKFRFVDFATRTNQKTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=409420 GPZ88_RS04070 WP_166043532.1 801158..801880(+) (treR) [Streptococcus ruminicola strain CNU_G2]
ATGAAAAAATACGAACAAGTTTTTAAAAAAATTGAACAAGATATTACATCAGGTGTTTATCAGGCTGGAGATTTCCTCCC
TACTGAAAACGAACTCACTCAAACTTATCAAATGAGCCGCGATACTATTCGAAAAGCCTTGAAATTGTTAGCCGAAGCAG
GCCTCATTCAAAAAATACATGGCTCTGGTTCACAGGTTATCAAACATGAAACCATTGATTTTCCAGTTTCACAACTCACA
AGCTATAAAGAGCTGGTTGATAGTTATGGCATTGACTCTAAAACCAATGTCATTTCTATTGATAAGCTCATTGTCGATGA
AAAATTAGCTGCGCTGACTGGTTTTAAAAAGAATAGTTTAGTTTGGCGCGTGATTCGTCAACGAGTAGTTGATGGCACAG
CTTCTGTCCTTGATATTGATTACCTAGATAAAAAAATCGTGCCAGATATGACACGAGAAATAGCTGAGCAATCTATTTAT
TACTATCTTGAAAAACAACTTCACTTGATTATTGCTTATGCCCAAAAAGAAATCACCATTGACCAACTCAATGACCGTGA
TAACCTTCTTCTTGATATTGGTGCTGAGCACCACGTCGTTTCCGTTAAATCAAAAGTCTATCTTGCCAACAAGCAGCAAT
TTCAATTCACCGAAAGCCGACACAAACTCGAAAAATTTCGCTTTGTTGATTTTGCTACACGAACTAACCAAAAAACTAGT
TAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

69.231

97.5

0.675

Multiple sequence alignment