Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GPZ88_RS03635 Genome accession   NZ_CP046919
Coordinates   707404..708765 (-) Length   453 a.a.
NCBI ID   WP_033153501.1    Uniprot ID   A0A6G8HZM5
Organism   Streptococcus ruminicola strain CNU_G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 702404..713765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS03615 (GPZ88_03585) gltX 703719..705176 (-) 1458 WP_074626856.1 glutamate--tRNA ligase -
  GPZ88_RS03620 (GPZ88_03590) - 705299..705796 (-) 498 WP_015695763.1 LURP-one-related/scramblase family protein -
  GPZ88_RS03625 (GPZ88_03595) - 705835..706761 (-) 927 WP_166043434.1 aldo/keto reductase -
  GPZ88_RS03630 (GPZ88_03600) - 706789..707286 (-) 498 WP_166043436.1 beta-class carbonic anhydrase -
  GPZ88_RS03635 (GPZ88_03605) radA 707404..708765 (-) 1362 WP_033153501.1 DNA repair protein RadA Machinery gene
  GPZ88_RS03640 (GPZ88_03610) - 708801..709247 (-) 447 WP_166043437.1 dUTP diphosphatase -
  GPZ88_RS03645 (GPZ88_03615) - 709274..710041 (-) 768 WP_166043439.1 epoxyqueuosine reductase QueH -
  GPZ88_RS03650 (GPZ88_03620) - 710242..711258 (+) 1017 WP_015695767.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GPZ88_RS03655 (GPZ88_03625) galU 711324..712238 (+) 915 WP_166044350.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPZ88_RS03660 (GPZ88_03630) - 712298..712969 (-) 672 WP_166043441.1 rhomboid family intramembrane serine protease -
  GPZ88_RS03665 (GPZ88_03635) - 712966..713493 (-) 528 WP_166043443.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.3749

>NTDB_id=409415 GPZ88_RS03635 WP_033153501.1 707404..708765(-) (radA) [Streptococcus ruminicola strain CNU_G2]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAEKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLVGIDMPSSIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=409415 GPZ88_RS03635 WP_033153501.1 707404..708765(-) (radA) [Streptococcus ruminicola strain CNU_G2]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAATATCTAGGACGTTGTCCAAACTG
TTCATCTTGGACGTCTTTTGTTGAAGAAGTCGAAGTACAAGAGGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTGAAGGACGTTAGCTCGATTAATTATTCACGCACAAAGACTGGCATGGATGAATTTAACCGCGTG
CTCGGTGGCGGTGTGGTGCCAGGTAGTCTGGTGCTTATCGGTGGTGACCCAGGTATCGGGAAATCAACGCTTCTTTTGCA
GGTTTCGATTCAACTGGCAGAGAAAGGAACGGTTCTTTACGTTTCTGGTGAAGAATCAGCTGAGCAGATTAAACTTCGCA
GTGAACGCCTTGGCGACATTGATAATGAATTTTACCTTTATGCTGAGACAAATATGCAAGCTATCCGTGCGCAGATTGAG
CAAATCCAGCCTGATTTCTTGATTATTGACTCGATTCAAACGATTATGAGTCCTGATATTTCAGGAGTCCAAGGTTCGGT
ATCTCAAGTGCGTGAAGTGACGGCAGAGCTCATGCAGTTGGCTAAGACTAATAACATCGCAACCTTCATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCTGGTCCACGTATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAGGGTGAACGC
CATCATACTTTCCGTATCTTGCGTGCAGTGAAAAACCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGGCTGGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTGGAAGAACGCTTGGATGGAGCGACTGGTTCAGCTATCG
TGGTAACCATGGAAGGTAGTCGTCCGATTTTGGCGGAGGTTCAAGCTTTGGTGACCCCAACGGTCTTTGGAAATGCCAAA
CGCACAACGACAGGTCTTGATTTTAACCGAGTCAGCTTGATTATGGCGGTGCTTGAAAAACGTTGTGGGCTTTTGTTGCA
AAATCAAGATGCTTATCTCAAGTCAGCTGGTGGGGTGAAACTTGATGAACCAGCGATTGACTTGGCAGTAGCGGTAGCTA
TTGCGTCAAGCTACAAAGAAAAGCCGACAAATCCACAAGAAGCTTTCATCGGTGAAATTGGTTTGACAGGTGAAATTCGT
CGCGTCACTCGTATTGAACAACGTATCAATGAAGCAGCTAAGCTTGGCTTTACAAAAGTTTACGCACCGAAAAATTCTTT
AGTTGGTATCGATATGCCATCATCTATTGAAGTTGTTGGTGTGACAACTGTTGGTGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

99.779

0.883
  radA Streptococcus pneumoniae D39

88.496

99.779

0.883
  radA Streptococcus pneumoniae R6

88.496

99.779

0.883
  radA Streptococcus pneumoniae TIGR4

88.496

99.779

0.883
  radA Streptococcus mitis SK321

88.496

99.779

0.883
  radA Streptococcus mitis NCTC 12261

88.274

99.779

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment