Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GPY14_RS13795 Genome accession   NZ_CP046918
Coordinates   2878128..2878418 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain BA-26     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2873128..2883418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY14_RS13755 (GPY14_13755) darA 2873145..2873474 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  GPY14_RS13760 (GPY14_13760) - 2873487..2873927 (+) 441 WP_004264730.1 YaaR family protein -
  GPY14_RS13765 (GPY14_13765) holB 2873939..2874928 (+) 990 WP_033575250.1 DNA polymerase III subunit delta' -
  GPY14_RS13770 (GPY14_13770) ricT 2874931..2875758 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  GPY14_RS13775 (GPY14_13775) yabA 2875773..2876132 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  GPY14_RS13780 (GPY14_13780) - 2876193..2876936 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GPY14_RS13785 (GPY14_13785) - 2876923..2877222 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  GPY14_RS13790 (GPY14_13790) rsmI 2877197..2878078 (+) 882 WP_040238641.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GPY14_RS13795 (GPY14_13795) abrB 2878128..2878418 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  GPY14_RS13800 (GPY14_13800) metG 2878902..2880895 (+) 1994 Protein_2748 methionine--tRNA ligase -
  GPY14_RS13805 (GPY14_13805) - 2880972..2881739 (+) 768 WP_032868379.1 TatD family hydrolase -
  GPY14_RS13810 (GPY14_13810) - 2881874..2883199 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=409367 GPY14_RS13795 WP_169510469.1 2878128..2878418(-) (abrB) [Bacillus velezensis strain BA-26]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=409367 GPY14_RS13795 WP_169510469.1 2878128..2878418(-) (abrB) [Bacillus velezensis strain BA-26]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCAATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment