Detailed information NTG0409327

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H0271_RS19140
• Genome accession: NZ_CP059279
• Coordinates: 3954995..3955987 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3949995..3960987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0271_RS19120 (H0271_19120)	ygbM	3950633..3951409 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
H0271_RS19125 (H0271_19125)	ygbN	3951498..3952862 (+)	1365	WP_000104433.1	GntP family transporter	-
H0271_RS19130 (H0271_19130)	-	3953005..3954048 (-)	1044	WP_139507528.1	MBL fold metallo-hydrolase	-
H0271_RS19135 (H0271_19135)	-	3954273..3954824 (+)	552	WP_001179444.1	flavodoxin family protein	-
H0271_RS19140 (H0271_19140)	rpoS	3954995..3955987 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H0271_RS19145 (H0271_19145)	nlpD	3956050..3957144 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
H0271_RS19150 (H0271_19150)	pcm	3957329..3957955 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H0271_RS19155 (H0271_19155)	surE	3957949..3958710 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H0271_RS19160 (H0271_19160)	truD	3958691..3959740 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
H0271_RS19165 (H0271_19165)	ispF	3959737..3960216 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H0271_RS19170 (H0271_19170)	ispD	3960216..3960926 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=409327 H0271_RS19140 WP_000081550.1 3954995..3955987(-) (rpoS) [Escherichia coli strain C7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=409327 H0271_RS19140 WP_000081550.1 3954995..3955987(-) (rpoS) [Escherichia coli strain C7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715