Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FAZ98_RS06080 Genome accession   NZ_CP046913
Coordinates   1400559..1401935 (+) Length   458 a.a.
NCBI ID   WP_158951889.1    Uniprot ID   A0A7Z2GJI7
Organism   Paraburkholderia acidisoli strain DHF22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395559..1406935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ98_RS06060 (FAZ98_06060) - 1395692..1396795 (+) 1104 WP_158951888.1 DUF1853 family protein -
  FAZ98_RS06065 (FAZ98_06065) thiD 1396900..1397706 (-) 807 WP_158949701.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FAZ98_RS06070 (FAZ98_06070) lplT 1397830..1399140 (-) 1311 WP_158949703.1 lysophospholipid transporter LplT -
  FAZ98_RS06075 (FAZ98_06075) alr 1399360..1400430 (+) 1071 WP_158949705.1 alanine racemase -
  FAZ98_RS06080 (FAZ98_06080) radA 1400559..1401935 (+) 1377 WP_158951889.1 DNA repair protein RadA Machinery gene
  FAZ98_RS06085 (FAZ98_06085) - 1402077..1402340 (+) 264 WP_158949707.1 DUF2866 domain-containing protein -
  FAZ98_RS06090 (FAZ98_06090) - 1402426..1403655 (-) 1230 WP_158949709.1 CaiB/BaiF CoA-transferase family protein -
  FAZ98_RS06095 (FAZ98_06095) - 1403729..1405684 (-) 1956 WP_158949711.1 ATP-binding cassette domain-containing protein -
  FAZ98_RS06100 (FAZ98_06100) - 1405828..1406310 (+) 483 WP_158949713.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48685.12 Da        Isoelectric Point: 6.7576

>NTDB_id=409310 FAZ98_RS06080 WP_158951889.1 1400559..1401935(+) (radA) [Paraburkholderia acidisoli strain DHF22]
MAKVKTLYTCSECGAQVPKWQGQCPACQAWNTLVEGVAEPAGNHRFQALAKSAPVRRLADIEASDVPRFSTGVGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQIAAERRALYVSGEESAAQIALRAQRLALLDPGSMASELQLLAEIQLEKIQ
ATIEAERPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHETSVPGSCVLVTQEGSRPLLVEVQALVDTAHV
PNPKRLAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSCALIPRANAPKQPIEGLNVIAVERIEEAIDRVRELE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=409310 FAZ98_RS06080 WP_158951889.1 1400559..1401935(+) (radA) [Paraburkholderia acidisoli strain DHF22]
ATGGCGAAGGTCAAGACGCTGTACACCTGTAGCGAATGCGGCGCGCAGGTGCCGAAGTGGCAAGGGCAGTGCCCCGCGTG
CCAGGCGTGGAACACGCTGGTGGAGGGCGTCGCGGAACCCGCGGGCAACCACCGTTTTCAGGCGCTCGCGAAGAGCGCGC
CGGTGCGCCGTCTCGCCGATATCGAGGCGTCGGACGTGCCGCGTTTCTCGACGGGCGTCGGCGAATTCGACCGCGTGCTC
GGCGGCGGTCTGGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGTATCGGCAAGTCGACGCTGTTGCTGCAGTC
GCTCGCGCAGATCGCGGCCGAACGTCGCGCGCTCTACGTGAGCGGCGAGGAATCGGCGGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGATCCGGGCTCGATGGCGAGCGAGTTGCAACTGCTCGCGGAAATCCAGCTCGAAAAAATCCAG
GCGACGATCGAGGCCGAGCGGCCCGACGTGGCCGTCATCGATTCGATCCAGACGATCTATTCCGAAGCGCTAACCTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCCCAGCTCACGCGTATCGCCAAGCAGTCGGGCACGGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGGCCGCGCGTGCTCGAACATATCGTCGACACCGTGCTGTACTTC
GAGGGCGATACCCATTCGTCGTTCCGCCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGAAGGGCCTGCGCGGCGTGGCGAATCCGTCGGCGCTCTTTCTCTCGCAGCACGAGACGAGCGTGCCGG
GCTCCTGCGTGCTGGTCACGCAGGAAGGTTCGCGGCCGCTGCTGGTGGAAGTGCAGGCGCTCGTCGATACGGCGCACGTG
CCCAACCCGAAGCGCCTCGCGGTCGGTCTCGAACAGAACCGGCTCGCGCTGCTGCTGGCGGTGCTGCATCGGCACGCGGG
AATCGCCTGCTTCGATCAGGACGTGTTCCTCAACGCGGTGGGCGGCGTGAAGATCACCGAACCGGCCGCCGACCTCGCCG
TGCTGCTCTCGATTCATTCGTCGATGCGTAACAAGGCGTTGCCCAAGGGTCTGATCGTTTTTGGCGAAGTCGGGCTGGCT
GGCGAAATCCGGCCGTCGCCGCGCGGACAGGATCGTCTGAAGGAAGCGGCCAAGCTCGGTTTTTCATGCGCCCTGATTCC
CCGCGCCAATGCGCCCAAGCAGCCGATCGAGGGGTTGAACGTCATTGCGGTCGAGCGAATCGAGGAAGCCATCGACCGCG
TGCGCGAGCTGGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2GJI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus pneumoniae Rx1

47.609

100

0.478
  radA Streptococcus pneumoniae R6

47.609

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.609

100

0.478
  radA Streptococcus pneumoniae D39

47.609

100

0.478
  radA Streptococcus mitis SK321

47.921

99.782

0.478
  radA Streptococcus mitis NCTC 12261

47.588

99.563

0.474

Multiple sequence alignment