Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FAZ97_RS06205 Genome accession   NZ_CP046909
Coordinates   1383457..1384833 (+) Length   458 a.a.
NCBI ID   WP_158759070.1    Uniprot ID   A0A7Z2G6H7
Organism   Paraburkholderia acidiphila strain 7Q-K02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1378457..1389833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ97_RS06185 (FAZ97_06185) - 1378813..1379898 (+) 1086 WP_158757652.1 DUF1853 family protein -
  FAZ97_RS06190 (FAZ97_06190) thiD 1379930..1380736 (-) 807 WP_158757653.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FAZ97_RS06195 (FAZ97_06195) lplT 1380839..1382149 (-) 1311 WP_158757654.1 lysophospholipid transporter LplT -
  FAZ97_RS06200 (FAZ97_06200) alr 1382370..1383440 (+) 1071 WP_158757655.1 alanine racemase -
  FAZ97_RS06205 (FAZ97_06205) radA 1383457..1384833 (+) 1377 WP_158759070.1 DNA repair protein RadA Machinery gene
  FAZ97_RS06210 (FAZ97_06210) - 1385047..1385238 (+) 192 WP_407671803.1 DUF2866 domain-containing protein -
  FAZ97_RS06215 (FAZ97_06215) - 1385310..1386548 (-) 1239 WP_233271644.1 CaiB/BaiF CoA-transferase family protein -
  FAZ97_RS06220 (FAZ97_06220) - 1386653..1388602 (-) 1950 WP_158757656.1 ATP-binding cassette domain-containing protein -
  FAZ97_RS06225 (FAZ97_06225) - 1388751..1389233 (+) 483 WP_158757657.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48666.09 Da        Isoelectric Point: 6.7576

>NTDB_id=409297 FAZ97_RS06205 WP_158759070.1 1383457..1384833(+) (radA) [Paraburkholderia acidiphila strain 7Q-K02]
MAKVKTLYTCTECGGQAPKWQGQCPACGAWNTLVEGVAESASSHRFQSLAKSAPVRRLADIEASDVPRFTTGVGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQIAAERRALYISGEESAAQIALRAQRLALLDPGSMASELQLLAEIQLEKIQ
ATIEAEKPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGSRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSCALIPRANAPKQPIEGLQVIAVERLEEAIDRVRELE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=409297 FAZ97_RS06205 WP_158759070.1 1383457..1384833(+) (radA) [Paraburkholderia acidiphila strain 7Q-K02]
ATGGCGAAGGTCAAGACACTGTATACGTGCACCGAATGCGGCGGCCAGGCGCCCAAGTGGCAAGGTCAGTGCCCCGCGTG
CGGCGCGTGGAACACGCTGGTGGAAGGCGTTGCCGAATCGGCGAGCAGCCACCGCTTTCAGTCGCTCGCGAAGAGCGCGC
CGGTGCGGCGTCTCGCCGATATCGAGGCGTCCGACGTGCCGCGCTTCACGACCGGCGTGGGCGAGTTCGACCGCGTGCTG
GGCGGCGGTCTCGTCGCGGGTGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCGACGCTGTTGCTGCAGTC
GCTCGCTCAGATCGCGGCCGAGCGTCGCGCGCTCTATATCAGCGGCGAAGAATCGGCTGCGCAGATCGCGTTGCGCGCGC
AACGATTGGCGCTGCTCGATCCGGGCTCCATGGCGAGCGAGTTGCAACTGCTCGCCGAGATCCAGCTCGAAAAGATCCAG
GCGACGATCGAAGCGGAAAAGCCCGACGTCGCGGTCATCGACTCGATCCAGACGATCTATTCCGAAGCGCTGACTTCCGC
GCCGGGCTCCGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACACGGATTGCGAAGCAGTCGGGCACGGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCTGGCCCGCGCGTGCTCGAGCATATCGTCGACACCGTGCTGTATTTC
GAAGGCGACACACATTCGTCGTTCCGTCTCGTGCGCGCATTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGAAGGGCCTGCGCGGCGTGGCGAATCCCTCGGCGCTCTTTCTCTCGCAGCACGAGCAGAGCGTGCCGG
GCTCCTGTGTGCTCGTGACCCAGGAGGGCTCGCGGCCGCTGCTCGTCGAGGTGCAGGCGCTCGTCGACACGGCGCACGTG
CCGAATCCGCGGCGCCTCGCCGTCGGCCTCGAACAAAACCGCCTTGCGATGCTGCTGGCGGTCTTGCATCGTCATGCCGG
CATTGCGTGCTTCGATCAGGACGTTTTCCTCAACGCGGTGGGCGGCGTGAAAATCACGGAGCCGGCTGCCGATCTGGCCG
TGCTGCTCGCCATCCACTCTTCGATGCGTAACAAGGCGTTGCCCAAGGGTCTGATCGTTTTTGGCGAAGTCGGTCTCGCC
GGCGAGATCCGACCCTCGCCGCGCGGCCAGGATCGTCTGAAGGAGGCGGCGAAGCTCGGTTTTTCATGCGCCCTGATTCC
CCGCGCCAATGCGCCGAAACAGCCGATCGAAGGTTTACAGGTGATTGCCGTGGAGCGTCTCGAGGAAGCGATCGACCGGG
TACGCGAGCTGGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(79-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2G6H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.892

100

0.502
  radA Streptococcus mitis SK321

48.035

100

0.48
  radA Streptococcus pneumoniae Rx1

47.722

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.722

100

0.48
  radA Streptococcus pneumoniae D39

47.722

100

0.48
  radA Streptococcus pneumoniae R6

47.722

100

0.48
  radA Streptococcus mitis NCTC 12261

47.702

99.782

0.476

Multiple sequence alignment