Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GO485_RS26595 Genome accession   NZ_CP046904
Coordinates   6150006..6151379 (+) Length   457 a.a.
NCBI ID   WP_145878252.1    Uniprot ID   A0A562PL72
Organism   Pseudoduganella flava strain DSM 26639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6145006..6156379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO485_RS26570 (GO485_26515) rimI 6145006..6145488 (+) 483 WP_145878240.1 ribosomal protein S18-alanine N-acetyltransferase -
  GO485_RS26575 (GO485_26520) - 6145485..6146459 (+) 975 WP_145878242.1 uracil-DNA glycosylase -
  GO485_RS26580 (GO485_26525) - 6146443..6147429 (+) 987 WP_145878245.1 DUF1853 family protein -
  GO485_RS26585 (GO485_26530) lplT 6147448..6148695 (-) 1248 WP_145878247.1 lysophospholipid transporter LplT -
  GO485_RS26590 (GO485_26535) alr 6148918..6150006 (+) 1089 WP_145878250.1 alanine racemase -
  GO485_RS26595 (GO485_26540) radA 6150006..6151379 (+) 1374 WP_145878252.1 DNA repair protein RadA Machinery gene
  GO485_RS26600 (GO485_26545) - 6151525..6151821 (+) 297 WP_229418866.1 PilZ domain-containing protein -
  GO485_RS26605 (GO485_26550) fliD 6151912..6153291 (+) 1380 WP_145878256.1 flagellar filament capping protein FliD -
  GO485_RS26610 (GO485_26555) - 6153381..6153860 (+) 480 WP_145878259.1 hypothetical protein -
  GO485_RS26615 (GO485_26560) sixA 6154151..6154618 (-) 468 WP_145878261.1 phosphohistidine phosphatase SixA -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48844.34 Da        Isoelectric Point: 8.0020

>NTDB_id=409265 GO485_RS26595 WP_145878252.1 6150006..6151379(+) (radA) [Pseudoduganella flava strain DSM 26639]
MAKAKTQYVCSECGGTSSKWTGQCPSCRQWNTMVETPIESAGVNRYSQQHQALAQTAPVLSLHEIEALDVPRFGTGIDEF
DRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANMSRVKSVLYVSGEESGAQIALRAKRLAIDAKEFKLQAEIQLEKILQ
TLGDVKPQVAVIDSIQTLYSDALTSAPGSVAQVRECAAQLTRVAKQSGVTIILVGHVTKEGALAGPRVLEHIVDSVLYFE
GDSHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHLP
NARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKALPRGFVVFGEVGLAG
EIRPAPRGQERLREAAKLGFSIAMIPKANAPKQPIEGMTIIAVDRIDDAFNRLRELQ

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=409265 GO485_RS26595 WP_145878252.1 6150006..6151379(+) (radA) [Pseudoduganella flava strain DSM 26639]
ATGGCCAAGGCAAAGACACAATACGTCTGCAGCGAGTGCGGCGGCACCAGCAGCAAATGGACGGGCCAGTGCCCGTCTTG
CCGGCAGTGGAACACGATGGTGGAAACGCCGATCGAGTCCGCCGGCGTGAACCGCTACTCGCAGCAGCACCAGGCGCTGG
CGCAGACGGCGCCGGTGCTGTCGCTGCACGAGATCGAGGCGCTGGACGTGCCGCGCTTCGGCACCGGAATCGATGAATTC
GACCGCGTGCTGGGCGGCGGCCTCGTGGCCGGCGGCGTCGTGTTGATCGGCGGCGATCCGGGCATCGGCAAATCCACCTT
GCTGTTGCAGGCGCTGGCCAATATGTCGCGTGTGAAGAGCGTGCTGTACGTGTCGGGCGAGGAGTCCGGCGCGCAGATCG
CGCTGCGCGCGAAACGCCTGGCGATCGATGCGAAGGAATTCAAGCTGCAGGCCGAGATCCAGCTGGAGAAGATCCTGCAG
ACCCTGGGCGACGTGAAGCCGCAGGTCGCGGTGATCGACTCGATCCAGACCCTGTATTCGGATGCGCTGACGTCGGCGCC
CGGTTCCGTCGCGCAGGTGCGCGAATGCGCCGCGCAGCTGACCCGCGTGGCCAAGCAGAGCGGCGTGACGATCATCCTCG
TCGGCCACGTGACGAAGGAAGGCGCGCTGGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACTCCGTGCTGTACTTCGAA
GGGGACAGCCATTCCAGCTTCCGCCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGC
GATGACGGAGAAGGGCTTGAAGGGCGTGTCGAATCCATCGGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCGGCT
CCTGCGTGATGGTGACGCAGGAAGGCACGCGGCCGCTGCTCGTCGAGATCCAGGCGCTGGTCGATGCAAGCCACCTGCCG
AACGCGCGGCGCCTGTCCGTCGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTCGCGGTGCTGCACCGGCATGCCGGCAT
CGCCGCGTTCGACCAGGATGTGTTCATCAACGCCGTCGGTGGCGTGAAGATCACCGAGCCGGCGGCTGACCTGGCGGTGC
TCCTGGCGATCAACTCGTCGATGCGCAACAAGGCGCTGCCGCGCGGCTTCGTCGTGTTCGGCGAGGTGGGCCTGGCCGGC
GAGATCCGGCCGGCCCCGCGCGGCCAGGAAAGGCTGCGCGAAGCCGCCAAGCTGGGCTTCTCGATCGCGATGATCCCGAA
GGCCAATGCGCCGAAGCAGCCGATCGAAGGGATGACGATCATCGCCGTCGACCGCATCGACGATGCGTTCAACCGATTGC
GCGAACTGCAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A562PL72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.366

100

0.486
  radA Streptococcus mitis SK321

46.711

99.781

0.466
  radA Streptococcus mitis NCTC 12261

46.593

99.562

0.464
  radA Streptococcus pneumoniae TIGR4

47.846

96.499

0.462
  radA Streptococcus pneumoniae Rx1

47.846

96.499

0.462
  radA Streptococcus pneumoniae D39

47.846

96.499

0.462
  radA Streptococcus pneumoniae R6

47.846

96.499

0.462

Multiple sequence alignment