Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GO485_RS11875 Genome accession   NZ_CP046904
Coordinates   2846365..2846760 (-) Length   131 a.a.
NCBI ID   WP_145874361.1    Uniprot ID   -
Organism   Pseudoduganella flava strain DSM 26639     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841365..2851760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO485_RS11860 (GO485_11840) - 2843142..2845421 (-) 2280 WP_145874358.1 methyl-accepting chemotaxis protein -
  GO485_RS11865 (GO485_11845) - 2845447..2845995 (-) 549 WP_145874359.1 chemotaxis protein CheW -
  GO485_RS11870 (GO485_11850) - 2845995..2846360 (-) 366 WP_145874360.1 PleD family two-component system response regulator -
  GO485_RS11875 (GO485_11855) pilG 2846365..2846760 (-) 396 WP_145874361.1 PleD family two-component system response regulator Regulator
  GO485_RS11880 (GO485_11860) - 2846951..2847103 (-) 153 WP_145874848.1 rubredoxin -
  GO485_RS11885 (GO485_11865) - 2847195..2848058 (+) 864 WP_145874362.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  GO485_RS11890 (GO485_11870) hemL 2848061..2849347 (+) 1287 WP_145874363.1 glutamate-1-semialdehyde 2,1-aminomutase -
  GO485_RS11895 (GO485_11875) - 2849572..2850840 (+) 1269 WP_145874364.1 Nramp family divalent metal transporter -
  GO485_RS11900 (GO485_11880) - 2850925..2851407 (+) 483 WP_145874365.1 cbb3-type cytochrome c oxidase subunit I -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14144.35 Da        Isoelectric Point: 7.9070

>NTDB_id=409247 GO485_RS11875 WP_145874361.1 2846365..2846760(-) (pilG) [Pseudoduganella flava strain DSM 26639]
MTTTPQATGPTIMVIDDSSTIRRSAEIFLSQAGYRVVLAEDGFDALAKIIEHHPALIFCDILMPRLDGYQTCALIKKSAR
FHTTPVLMLSSKDGLFDRARGAMVGSSAYLTKPFSKDSLLAAVREHTGAGA

Nucleotide


Download         Length: 396 bp        

>NTDB_id=409247 GO485_RS11875 WP_145874361.1 2846365..2846760(-) (pilG) [Pseudoduganella flava strain DSM 26639]
ATGACGACAACGCCGCAAGCGACCGGCCCGACGATCATGGTGATCGACGACAGCAGCACGATACGCCGGTCGGCCGAGAT
CTTCCTGTCCCAGGCGGGCTACCGGGTGGTGCTGGCCGAAGACGGCTTCGACGCGCTGGCCAAGATCATCGAACATCACC
CGGCGCTGATCTTCTGCGACATCCTGATGCCCCGTCTGGACGGTTACCAGACCTGCGCGCTGATCAAGAAGAGCGCCAGG
TTCCACACCACGCCCGTGCTGATGCTGTCGTCCAAGGACGGCCTGTTCGACCGCGCGCGCGGCGCGATGGTCGGCTCGTC
CGCTTACCTCACGAAACCCTTCAGTAAAGACAGCCTGCTGGCCGCCGTGCGCGAGCACACCGGCGCGGGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.712

90.076

0.565

Multiple sequence alignment