Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GQA94_RS21655 Genome accession   NZ_CP046902
Coordinates   4645812..4647173 (+) Length   453 a.a.
NCBI ID   WP_158189951.1    Uniprot ID   A0A6I6LUW5
Organism   Stutzerimonas stutzeri strain PM101005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4640812..4652173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQA94_RS21635 (GQA94_21640) - 4643177..4644208 (+) 1032 WP_158189948.1 cytochrome-c peroxidase -
  GQA94_RS21640 (GQA94_21645) mscL 4644261..4644671 (-) 411 WP_158190196.1 large-conductance mechanosensitive channel protein MscL -
  GQA94_RS21645 (GQA94_21650) - 4644884..4645153 (+) 270 WP_158189949.1 DUF465 domain-containing protein -
  GQA94_RS21650 (GQA94_21655) - 4645262..4645696 (-) 435 WP_158189950.1 CopD family protein -
  GQA94_RS21655 (GQA94_21660) radA 4645812..4647173 (+) 1362 WP_158189951.1 DNA repair protein RadA Machinery gene
  GQA94_RS21660 (GQA94_21665) - 4647187..4647555 (-) 369 WP_158189952.1 PilZ domain-containing protein -
  GQA94_RS21665 (GQA94_21670) - 4647620..4648081 (-) 462 WP_158189953.1 isoprenylcysteine carboxylmethyltransferase family protein -
  GQA94_RS21670 (GQA94_21675) - 4648199..4648837 (-) 639 WP_158189954.1 response regulator transcription factor -
  GQA94_RS21675 (GQA94_21680) - 4648873..4650225 (-) 1353 WP_158189955.1 cache domain-containing protein -
  GQA94_RS21680 (GQA94_21685) glyA 4650397..4651650 (-) 1254 WP_158189956.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48512.02 Da        Isoelectric Point: 6.7492

>NTDB_id=409242 GQA94_RS21655 WP_158189951.1 4645812..4647173(+) (radA) [Stutzerimonas stutzeri strain PM101005]
MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETIIEGAAPPSGRAGWAGDQANIKTLAEVSVEEVPRFSTASGELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIARQFPALYVTGEESQQQVAMRARRLDLPQDRLKVMTETCIESIIATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVTNPSAIFLTRAQEAVPGSVVMATWEGTRPMLVEVQALVDTSHMANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFINVVGGVKVLETASDLALMAAVISSLRNRPLDTDLLVFGEVGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=409242 GQA94_RS21655 WP_158189951.1 4645812..4647173(+) (radA) [Stutzerimonas stutzeri strain PM101005]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAGTGTGGCTCGACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGACTG
TGGCGCCTGGAACACCCTGGTGGAAACAATCATAGAGGGCGCTGCTCCGCCGAGCGGTCGCGCGGGCTGGGCTGGAGACC
AGGCGAACATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAGTCCCCCGTTTTTCCACCGCATCCGGCGAACTGGACCGC
GTGCTCGGAGGCGGGCTGGTGGACGGCTCGGTGGTACTCATCGGAGGCGACCCCGGCATCGGCAAATCGACCATCCTGCT
GCAGACGCTGTGCAATATCGCTCGGCAGTTCCCCGCCCTCTATGTCACGGGCGAAGAATCGCAGCAGCAGGTGGCCATGC
GCGCACGGCGGCTGGATCTGCCGCAGGACAGACTCAAGGTCATGACCGAAACCTGCATCGAGTCGATCATCGCCACCGCA
CGCCTGGAAAAACCCAAGGTGATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCCCCCGGCGG
CGTCGCCCAGGTCCGCGAAAGCGCGGCGCTGTTGGTGCGTTTCGCCAAGCAGAGCGGTACGGCGATTTTCCTGGTGGGTC
ACGTGACCAAGGAAGGCGCGCTCGCCGGGCCTCGCGTGCTTGAACACATGGTCGATACGGTGCTGTATTTCGAAGGCGAA
TCGGACGGTCGCCTGCGGCTGCTGCGCGCGGTGAAGAACCGGTTCGGTGCCGTCAATGAACTGGGCGTGTTCGGCATGAC
CGACAAAGGCTTGAAGGAAGTCACCAACCCCTCGGCGATCTTCCTCACCCGTGCCCAGGAAGCAGTGCCCGGCAGCGTGG
TCATGGCCACATGGGAAGGCACTCGCCCAATGCTGGTCGAGGTCCAGGCCCTGGTTGATACCAGTCACATGGCCAATCCG
CGTCGCGTCACCCTCGGCCTCGATCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCATCGCCACGGCGGCATACCCAC
CTACGACCAGGACGTCTTCATCAACGTGGTCGGAGGCGTCAAGGTACTGGAAACCGCGTCGGACCTCGCGCTGATGGCCG
CGGTGATATCCAGCCTGCGCAATCGCCCTCTGGATACCGACCTGCTGGTCTTTGGCGAGGTGGGACTTTCCGGCGAGATT
CGTCCGGTACCGAGCGGTCAGGAACGGTTGAAGGAAGCCGCCAAGCACGGTTTCAAACGTGCCATCGTGCCCAAGGGCAA
CGCGCCCAAGGAAGCGCCCGCCGGGCTGCAGATCATCGCGGTAACACGCCTCGAGCAGGCGCTGGACGCCCTGTTCGAAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-219)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6LUW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.124

100

0.481
  radA Streptococcus pneumoniae Rx1

46.171

100

0.466
  radA Streptococcus pneumoniae D39

46.171

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.171

100

0.466
  radA Streptococcus pneumoniae R6

46.171

100

0.466
  radA Streptococcus mitis NCTC 12261

45.952

100

0.464
  radA Streptococcus mitis SK321

46.137

100

0.461

Multiple sequence alignment