Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SSUD12_RS09960 Genome accession   NC_017621
Coordinates   2018833..2019282 (-) Length   149 a.a.
NCBI ID   WP_014638750.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2013833..2024282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS09945 (SSUD12_2010) - 2014504..2015133 (+) 630 WP_014638747.1 ABC transporter ATP-binding protein -
  SSUD12_RS09950 (SSUD12_2011) - 2015349..2017133 (-) 1785 WP_014638748.1 ABC transporter ATP-binding protein -
  SSUD12_RS09955 (SSUD12_2012) - 2017134..2018840 (-) 1707 WP_014638749.1 ABC transporter ATP-binding protein -
  SSUD12_RS09960 (SSUD12_2013) rcrR 2018833..2019282 (-) 450 WP_014638750.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SSUD12_RS09965 (SSUD12_2014) - 2019504..2020520 (+) 1017 WP_014638751.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SSUD12_RS09970 (SSUD12_2015) galU 2020566..2021465 (+) 900 WP_014638752.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SSUD12_RS09975 (SSUD12_2016) - 2021483..2022160 (-) 678 WP_014638753.1 rhomboid family intramembrane serine protease -
  SSUD12_RS09980 (SSUD12_2017) - 2022144..2022686 (-) 543 WP_014638754.1 5-formyltetrahydrofolate cyclo-ligase -
  SSUD12_RS09985 (SSUD12_2018) - 2022727..2023854 (-) 1128 WP_014638755.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17510.02 Da        Isoelectric Point: 7.1308

>NTDB_id=40912 SSUD12_RS09960 WP_014638750.1 2018833..2019282(-) (rcrR) [Streptococcus suis D12]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFLGIQKEDFDLVRQVADQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=40912 SSUD12_RS09960 WP_014638750.1 2018833..2019282(-) (rcrR) [Streptococcus suis D12]
GTGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCACTTTTTTTGGGCATTCAAAAAGAGGACTTTGATTTGGTTAGGCAAGTAGCCG
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

44.366

95.302

0.423

Multiple sequence alignment