Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H0233_RS00960 Genome accession   NZ_CP059159
Coordinates   191391..192896 (-) Length   501 a.a.
NCBI ID   WP_002854276.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain OBT12393     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 186391..197896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0233_RS00930 (H0233_00930) - 186593..187777 (-) 1185 WP_002854511.1 metallophosphoesterase -
  H0233_RS00935 (H0233_00935) - 187787..187996 (-) 210 WP_002854471.1 alkylphosphonate utilization protein -
  H0233_RS00940 (H0233_00940) - 187989..188708 (-) 720 WP_002851673.1 TerC family protein -
  H0233_RS00945 (H0233_00945) purN 188780..189346 (-) 567 WP_002854200.1 phosphoribosylglycinamide formyltransferase -
  H0233_RS00950 (H0233_00950) - 189337..190707 (-) 1371 WP_002854658.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  H0233_RS00955 (H0233_00955) - 190691..191389 (-) 699 WP_002826913.1 NYN domain-containing protein -
  H0233_RS00960 (H0233_00960) comM 191391..192896 (-) 1506 WP_002854276.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H0233_RS00965 (H0233_00965) def 192893..193420 (-) 528 WP_002854377.1 peptide deformylase -
  H0233_RS00970 (H0233_00970) clpP 193456..194040 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  H0233_RS00975 (H0233_00975) tig 194040..195374 (-) 1335 WP_002854275.1 trigger factor -
  H0233_RS00980 (H0233_00980) folE 195518..196090 (+) 573 WP_002854344.1 GTP cyclohydrolase I FolE -
  H0233_RS00985 (H0233_00985) fliI 196090..197475 (+) 1386 WP_002854283.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56363.41 Da        Isoelectric Point: 8.7417

>NTDB_id=409085 H0233_RS00960 WP_002854276.1 191391..192896(-) (comM) [Campylobacter jejuni subsp. jejuni strain OBT12393]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=409085 H0233_RS00960 WP_002854276.1 191391..192896(-) (comM) [Campylobacter jejuni subsp. jejuni strain OBT12393]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGACTTGCAAGTGTAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATTACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTTTCTGCTAAAATTAAAAAAGCTAAAATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTCGCAAGCCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGACAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAGCCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTACTAGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473