Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GPM17_RS25105 Genome accession   NZ_CP046872
Coordinates   5506078..5506479 (-) Length   133 a.a.
NCBI ID   WP_003249324.1    Uniprot ID   A0AAD2W8A3
Organism   Pseudomonas putida strain MX-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5501078..5511479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPM17_RS25090 (GPM17_25000) - 5503042..5505066 (-) 2025 WP_223817433.1 methyl-accepting chemotaxis protein -
  GPM17_RS25095 (GPM17_25005) - 5505114..5505668 (-) 555 WP_003249330.1 chemotaxis protein CheW -
  GPM17_RS25100 (GPM17_25010) pilH 5505665..5506030 (-) 366 WP_014592657.1 twitching motility response regulator PilH -
  GPM17_RS25105 (GPM17_25015) pilG 5506078..5506479 (-) 402 WP_003249324.1 PleD family two-component system response regulator Regulator
  GPM17_RS25110 (GPM17_25020) gshB 5506718..5507671 (+) 954 WP_003249322.1 glutathione synthase -
  GPM17_RS25115 (GPM17_25025) - 5507763..5508668 (+) 906 WP_003249319.1 energy transducer TonB -
  GPM17_RS25120 (GPM17_25030) - 5508833..5509402 (+) 570 WP_003249318.1 YqgE/AlgH family protein -
  GPM17_RS25125 (GPM17_25035) ruvX 5509402..5509827 (+) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  GPM17_RS25130 (GPM17_25040) pyrR 5509877..5510395 (+) 519 WP_003249313.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GPM17_RS25135 (GPM17_25045) - 5510408..5511412 (+) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14632.88 Da        Isoelectric Point: 6.4772

>NTDB_id=409054 GPM17_RS25105 WP_003249324.1 5506078..5506479(-) (pilG) [Pseudomonas putida strain MX-2]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFATPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=409054 GPM17_RS25105 WP_003249324.1 5506078..5506479(-) (pilG) [Pseudomonas putida strain MX-2]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTAATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGCATCATTTTTG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTTATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGGCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGATGCGATCCGCGCCCATGTGCCCGGGTTCGCCACACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment