Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GPM17_RS04120 Genome accession   NZ_CP046872
Coordinates   921068..922438 (+) Length   456 a.a.
NCBI ID   WP_003251626.1    Uniprot ID   I7AVL1
Organism   Pseudomonas putida strain MX-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 916068..927438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPM17_RS04095 (GPM17_04100) - 916711..916866 (+) 156 WP_003251614.1 DUF2474 domain-containing protein -
  GPM17_RS04100 (GPM17_04105) - 916972..918096 (-) 1125 WP_003251615.1 methyltransferase -
  GPM17_RS04105 (GPM17_04110) - 918193..918900 (-) 708 WP_003251617.1 autoinducer binding domain-containing protein -
  GPM17_RS04110 (GPM17_04115) - 919116..919892 (+) 777 WP_108191302.1 ferredoxin--NADP reductase -
  GPM17_RS04115 (GPM17_04120) mscL 920472..920891 (-) 420 WP_003251622.1 large-conductance mechanosensitive channel protein MscL -
  GPM17_RS04120 (GPM17_04125) radA 921068..922438 (+) 1371 WP_003251626.1 DNA repair protein RadA Machinery gene
  GPM17_RS04125 (GPM17_04130) - 922474..923991 (-) 1518 WP_003251628.1 nucleobase:cation symporter-2 family protein -
  GPM17_RS04130 (GPM17_04135) - 924255..924616 (-) 362 Protein_802 PilZ domain-containing protein -
  GPM17_RS04135 (GPM17_04140) - 924794..926860 (+) 2067 WP_185279976.1 carbon starvation CstA family protein -
  GPM17_RS04140 (GPM17_04145) - 926878..927075 (+) 198 WP_003251633.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48741.18 Da        Isoelectric Point: 6.8985

>NTDB_id=409040 GPM17_RS04120 WP_003251626.1 921068..922438(+) (radA) [Pseudomonas putida strain MX-2]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=409040 GPM17_RS04120 WP_003251626.1 921068..922438(+) (radA) [Pseudomonas putida strain MX-2]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAATGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGCGGCGCTGCTGCACCCAGTAGCGGCCGCGCAGGCTGGA
CAGGACAGCAGGCGCAAATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACCACCAGCAGCACCGAA
CTGGACCGCGTGCTGGGTGGCGGCTTGGTGGATGGCTCGGTGGTGCTGATTGGCGGTGACCCCGGCATCGGCAAGTCGAC
CATTTTGCTACAGACCTTGTGCAACATCGCCGTGGGCATGCCGGCACTGTATGTCACGGGGGAGGAGTCGCAGCAGCAGG
TGGCCATGCGCTCGCGGCGGCTGGGCCTACCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAGACGATCATT
GCCACAGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACTCGATCCAGACCATTTTCACTGAGCAGTTGCAATCGGC
CCCGGGCGGCGTGGCCCAGGTGCGCGAAAGCACAGCGTTGCTGGTGCGCTATGCCAAGCAAAGCGGTACGGCAATCTTTC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTGGCTGGCCCAAGGGTGCTGGAGCACATGGTCGACACGGTGCTGTATTTC
GAAGGTGAGTCCGATGGCCGGCTGCGCTTGCTGCGGGCGGTCAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTT
CGGCATGACCGATCGTGGCCTCAAGGAGGTATCCAACCCGTCGGCGATCTTCCTCAACCGTACTCAGGAAGAGGTGCCGG
GTAGCGTGGTGATGGCAACCTGGGAGGGTACCCGGCCAATGCTGGTCGAGGTGCAGGCGCTGGTCGACGATAGCCATCTG
GCCAACCCGCGGCGGGTAACCTTGGGCCTGGACCAGAACCGCCTGGCCATGTTGTTGGCGGTGCTCCACCGCCATGGCGG
TATCCCGACCCATGACCAGGACGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCTTGCGTAACCGGCCACTGGCCCACGGTTTGCTGGTGTTTGGCGAGATTGGCTTGTCG
GGCGAGGTACGGCCGGTGCCCAGTGGTCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGTGCCATCGTACC
CAAGGGCAATGCGCCGAAAGAAGCGCCTGCGGGGTTGCAGGTGATTGCCGTTACCCGCCTGGAACAGGCGCTGGATGCAT
TGTTCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7AVL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461

Multiple sequence alignment