Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GO174_RS15410 Genome accession   NZ_CP046858
Coordinates   36684..37781 (-) Length   365 a.a.
NCBI ID   WP_024375537.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 31684..42781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS15390 - 32223..32597 (+) 375 WP_020433707.1 NirD/YgiW/YdeI family stress tolerance protein -
  GO174_RS15395 - 32750..33274 (+) 525 WP_020329295.1 hypothetical protein -
  GO174_RS15400 - 33409..34089 (+) 681 WP_020433710.1 flagellar brake protein -
  GO174_RS15405 luxQ 34095..36662 (-) 2568 WP_158125779.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GO174_RS15410 luxP 36684..37781 (-) 1098 WP_024375537.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GO174_RS15415 - 37993..39150 (-) 1158 WP_158125780.1 conjugal transfer protein TraF -
  GO174_RS15420 - 39264..39545 (-) 282 WP_158125781.1 GIY-YIG nuclease family protein -
  GO174_RS15425 - 39556..40191 (-) 636 WP_020433719.1 YceH family protein -
  GO174_RS15430 - 40236..40433 (-) 198 WP_020329288.1 hypothetical protein -
  GO174_RS15435 - 40623..40940 (+) 318 WP_020329287.1 DUF496 family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41555.79 Da        Isoelectric Point: 5.0163

>NTDB_id=409019 GO174_RS15410 WP_024375537.1 36684..37781(-) (luxP) [Vibrio fluvialis strain 2015AW-0233]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=409019 GO174_RS15410 WP_024375537.1 36684..37781(-) (luxP) [Vibrio fluvialis strain 2015AW-0233]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAAAAAACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAAAGCAAGCCTGTGACCATTTCGGTCGTCTACCCGGGCCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGCTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCGCTGAAAAACAACACCGATTATCTGATCTTTA
CTCTCGATACCACCCGTCACCGCAAGTTTATCGAGCATGTTCTCAGTTCCTCGCCAACCAAATTGATTCTTCAGAATATC
ACCACTCCGGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGTGCGCAGCAACT
GGCGCAGTATTATCGCGAACACGTGCCTAAAGGCAGCAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCCACT
CAGGAGAGTGGTTACGAAGCAACGCTCAACATCCTGAAAAACGATCCTGACATCAAATTTATTTATGCCTGTTCAACGGA
TGTGGCACTGGGTGCTGCACAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTCAACGGTTGGGGCGGTGGCTCGG
CAGAGCTTGAAGCGCTGAATGAAGGGCATCTGGATGTGACCGTGATGCGCATCAACGACGATACGGGTATTGCAATGGCG
GAAGCCATCAAACGCGACCTCGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAGAAGA
TAGTTCGCAAAAAATCGATGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.685

100

0.707

Multiple sequence alignment