Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GO174_RS12320 Genome accession   NZ_CP046857
Coordinates   2609235..2609870 (+) Length   211 a.a.
NCBI ID   WP_308415348.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2604235..2614870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS12300 - 2604604..2605266 (+) 663 WP_047459239.1 hypothetical protein -
  GO174_RS12305 - 2605322..2607631 (+) 2310 WP_020429362.1 Tex family protein -
  GO174_RS12310 - 2607713..2608183 (-) 471 WP_020329343.1 hypothetical protein -
  GO174_RS12315 bioH 2608312..2609082 (-) 771 WP_158125755.1 pimeloyl-ACP methyl ester esterase BioH -
  GO174_RS12320 comF 2609235..2609870 (+) 636 WP_308415348.1 phosphoribosyltransferase family protein Machinery gene
  GO174_RS12325 nfuA 2609971..2610558 (+) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  GO174_RS12330 nudE 2610704..2611252 (+) 549 WP_020429366.1 ADP compounds hydrolase NudE -
  GO174_RS12335 cysQ 2611276..2612103 (+) 828 WP_032080325.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GO174_RS12340 - 2612133..2612891 (-) 759 WP_158125486.1 type II secretion system protein N -
  GO174_RS12345 - 2612891..2613397 (-) 507 WP_158125487.1 type II secretion system protein M -
  GO174_RS12350 gspL 2613407..2614618 (-) 1212 WP_158125488.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23783.32 Da        Isoelectric Point: 8.7674

>NTDB_id=409010 GO174_RS12320 WP_308415348.1 2609235..2609870(+) (comF) [Vibrio fluvialis strain 2015AW-0233]
MPLESHSTQSLCGACLDWYAPATRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDYRFPLNQSVHQLKYQRQFWQARP
LAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRLATPPQQGLNKAQRRRNLNQAFV
LNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 636 bp        

>NTDB_id=409010 GO174_RS12320 WP_308415348.1 2609235..2609870(+) (comF) [Vibrio fluvialis strain 2015AW-0233]
TTGCCCCTTGAATCTCATAGCACGCAGAGCTTGTGCGGCGCATGCCTCGACTGGTACGCACCAGCCACGCGTTGCGCTCG
CTGCGGCCTGCCTTGTGAAACCGCCACCGAACAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCACAAGCTCTATT
GTTTGGGCGATTACCGTTTTCCACTCAACCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCGGCCG
CTGGCCGGATTGTTAGCCCCAAGAATTGTATCGCCCGCCCCACTGGTGACCTGCGTACCGCTGCACTGGCGCCGCCATGC
CTGGCGCGGTTTCAATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGT
TTTCCCGTCGCCTGGCTACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGACGGCGGAATCTCAACCAAGCTTTTGTC
TTAAACAGTGCGCCGAGCCACAGACACATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATG
CAATTTACTGCTTGATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.403

100

0.654
  comF Vibrio campbellii strain DS40M4

52.709

96.209

0.507

Multiple sequence alignment