Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GO174_RS12060 Genome accession   NZ_CP046857
Coordinates   2546404..2547411 (-) Length   335 a.a.
NCBI ID   WP_158125478.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541404..2552411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS12035 rraA 2542045..2542572 (-) 528 WP_020329402.1 ribonuclease E activity regulator RraA -
  GO174_RS12040 - 2542648..2543565 (-) 918 WP_020329401.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GO174_RS12045 hslU 2543654..2544985 (-) 1332 WP_020329400.1 HslU--HslV peptidase ATPase subunit -
  GO174_RS12050 hslV 2545027..2545581 (-) 555 WP_020329399.1 ATP-dependent protease subunit HslV -
  GO174_RS12055 ftsN 2545717..2546274 (-) 558 WP_024373673.1 cell division protein FtsN -
  GO174_RS12060 cytR 2546404..2547411 (-) 1008 WP_158125478.1 DNA-binding transcriptional regulator CytR Regulator
  GO174_RS12065 priA 2547716..2549917 (-) 2202 WP_158125479.1 primosomal protein N' -
  GO174_RS12070 rpmE 2550163..2550381 (+) 219 WP_020329395.1 50S ribosomal protein L31 -
  GO174_RS12075 - 2550593..2551870 (+) 1278 WP_024373675.1 malic enzyme-like NAD(P)-binding protein -
  GO174_RS12080 metJ 2551947..2552264 (-) 318 WP_020329393.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36944.48 Da        Isoelectric Point: 6.3516

>NTDB_id=409008 GO174_RS12060 WP_158125478.1 2546404..2547411(-) (cytR) [Vibrio fluvialis strain 2015AW-0233]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPEAAVLCQFRQQGYQQALRRAGITRNPTYSMSGDFTFESGAKAVRQLLALPEPPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQTMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRSM

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=409008 GO174_RS12060 WP_158125478.1 2546404..2547411(-) (cytR) [Vibrio fluvialis strain 2015AW-0233]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTTTCGACGGCGACGGTCTCGCGCGCTCTGATGAATCCCGAAAA
AGTTTCAGCCTCAACCCGTAAGCGGGTCGAGGAGGCAGTTTTAGAAGCTGGCTATTCACCGAATTCTTTGGCCCGAAATC
TGCGCCGCAATGAGTCAAAAACCATTGTCGCGATAGTGCCGGATATCTGTGACCCTTATTACACAGAGATCATTCGTGGT
ATCGAAGATGCTGCAATGGAACACGGTTATCTGGTGCTGCTGGGCGACAGCGGACAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTTACCAAACAAGCGGACGGCATGTTACTGCTGGGGACTGACTTGCCGTTTGATGTGAGCAAACCCG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCGGAGCTTGAGCTACCTACGGTACATATTGATAAC
CTGACATCGGCGTTTGAAGCCGTGAACTATCTGACTCAGATGGGGCACAAACGTGTGGCGCAAATCGCCGGACCGGAAGC
CGCGGTGCTGTGTCAGTTTCGTCAGCAAGGTTATCAGCAGGCGCTGCGTCGTGCGGGTATCACTCGCAATCCGACCTACA
GTATGAGTGGTGACTTTACTTTTGAGTCCGGAGCCAAAGCGGTGCGTCAATTATTGGCCCTGCCTGAGCCACCAACGGCT
ATCTTCTGTCACAACGATACCATGGCGATTGGCGCGATTCAGGAAGCGAAACGTCTGGGACTGCGCGTACCGCAGGATCT
CTCTGTGGTGGGCTTTGATGACATTCAATTCGCCCAGTACTGCGATCCACCGCTGACGACCATCTCTCAGCCTCGCTACG
AGATTGGCCGTCAGACGATGCTGATGATGCTGGAATTGCTGCGTGGTCATGACGTGCGTGCCGGCTCACGTTTGCTGGAA
ACTCAGCTGGTGGTGCGTGAGAGCGCAGCGCCGCCTCGTTCGATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.976

99.104

0.931
  cytR Vibrio parahaemolyticus RIMD 2210633

90.39

99.403

0.899

Multiple sequence alignment