Detailed information NTG0408994

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GO174_RS04170
• Genome accession: NZ_CP046857
• Coordinates: 893179..894603 (-)
• Length: 474 a.a.
• NCBI ID: WP_158124839.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 2015AW-0233
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 888179..899603

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO174_RS04150	-	888312..890957 (+)	2646	WP_242008710.1	EAL domain-containing protein	-
GO174_RS04155	cdd	891004..891891 (-)	888	WP_020327590.1	cytidine deaminase	-
GO174_RS04160	-	892093..892773 (-)	681	WP_020327589.1	LrgB family protein	-
GO174_RS04165	-	892764..893138 (-)	375	WP_020327588.1	CidA/LrgA family protein	-
GO174_RS04170	sbcB	893179..894603 (-)	1425	WP_158124839.1	exodeoxyribonuclease I	Machinery gene
GO174_RS04175	-	894841..895053 (+)	213	WP_075989234.1	hypothetical protein	-
GO174_RS04180	-	895133..896512 (-)	1380	WP_020432565.1	L-cystine transporter	-
GO174_RS04185	-	896713..897396 (-)	684	WP_158124842.1	NAD(P)H-binding protein	-
GO174_RS04190	-	897781..898392 (+)	612	WP_158124844.1	flavin reductase family protein	-
GO174_RS04195	cobT	898406..899434 (+)	1029	WP_020327523.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54443.90 Da
• Isoelectric Point: 5.2401

>NTDB_id=408994 GO174_RS04170 WP_158124839.1 893179..894603(-) (sbcB) [Vibrio fluvialis strain 2015AW-0233]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVLYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELNITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPEYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=408994 GO174_RS04170 WP_158124839.1 893179..894603(-) (sbcB) [Vibrio fluvialis strain 2015AW-0233]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTGCGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGCTCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTTGAGCATTTGTCCAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
GACCATTGAACTGGCGAAGAAAGTCAAAGCGGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
CGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGAATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGAATACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.298	99.789	0.831