Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GO174_RS02480 Genome accession   NZ_CP046857
Coordinates   523116..524477 (+) Length   453 a.a.
NCBI ID   WP_143683573.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 518116..529477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS02460 rsxB 518729..519328 (-) 600 WP_020327943.1 electron transport complex subunit RsxB -
  GO174_RS02465 rsxA 519328..519909 (-) 582 WP_004726646.1 electron transport complex subunit RsxA -
  GO174_RS02475 uvrB 520799..522829 (+) 2031 WP_020327930.1 excinuclease ABC subunit UvrB -
  GO174_RS02480 luxO 523116..524477 (+) 1362 WP_143683573.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GO174_RS02485 luxU 524484..524822 (+) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  GO174_RS02490 - 524811..525701 (-) 891 WP_020431738.1 YvcK family protein -
  GO174_RS02495 moaA 526012..527001 (+) 990 WP_055452068.1 GTP 3',8-cyclase MoaA -
  GO174_RS02500 moaB 527073..527585 (+) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  GO174_RS02505 moaC 527595..528074 (+) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  GO174_RS02510 moaD 528071..528316 (+) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  GO174_RS02515 moaE 528318..528773 (+) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50303.55 Da        Isoelectric Point: 5.5480

>NTDB_id=408986 GO174_RS02480 WP_143683573.1 523116..524477(+) (luxO) [Vibrio fluvialis strain 2015AW-0233]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISVPKASVAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=408986 GO174_RS02480 WP_143683573.1 523116..524477(+) (luxO) [Vibrio fluvialis strain 2015AW-0233]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACTGGGCGTGAAGCGATCGAAAGTATCGCGCATCGCGAACCGGATCTCATTCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAATCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTTTATCGCACCATTGACTCTGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTCGACGCGGCGACAAACCGTTCATCGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAATTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGATTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTTAAACAATACGAATGGCC
AGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGTCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.48

98.455

0.901

Multiple sequence alignment