Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GO174_RS00660 Genome accession   NZ_CP046857
Coordinates   124047..124565 (+) Length   172 a.a.
NCBI ID   WP_158124315.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 119047..129565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS00650 gshA 121852..123417 (+) 1566 WP_158124313.1 glutamate--cysteine ligase -
  GO174_RS00655 - 123419..124021 (+) 603 WP_158124314.1 hypothetical protein -
  GO174_RS00660 luxS 124047..124565 (+) 519 WP_158124315.1 S-ribosylhomocysteine lyase Regulator
  GO174_RS00665 - 124634..125908 (-) 1275 WP_020330450.1 HlyC/CorC family transporter -
  GO174_RS00670 - 125998..126792 (-) 795 WP_020330452.1 inner membrane protein YpjD -
  GO174_RS00675 ffh 127005..128387 (+) 1383 WP_020330453.1 signal recognition particle protein -
  GO174_RS00680 rpsP 128613..128861 (+) 249 WP_020330454.1 30S ribosomal protein S16 -
  GO174_RS00685 rimM 128889..129443 (+) 555 WP_020330455.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18939.90 Da        Isoelectric Point: 5.5627

>NTDB_id=408983 GO174_RS00660 WP_158124315.1 124047..124565(+) (luxS) [Vibrio fluvialis strain 2015AW-0233]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRTHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408983 GO174_RS00660 WP_158124315.1 124047..124565(+) (luxS) [Vibrio fluvialis strain 2015AW-0233]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACTATTACAGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCACGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCCTGGTTGGCTGC
AATGCAAGATGTACTGAAAGTGGAAAGTCAGGACAAGATTCCTGAGCTGAACGAATACCAGTGTGGCACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment