Detailed information NTG0408980

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GO174_RS00540
• Genome accession: NZ_CP046857
• Coordinates: 102150..103136 (+)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain 2015AW-0233
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 97150..108136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO174_RS00505	ftsB	97219..97500 (+)	282	WP_020330423.1	cell division protein FtsB	-
GO174_RS00510	ispD	97497..98207 (+)	711	WP_158124306.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GO174_RS00515	ispF	98210..98686 (+)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GO174_RS00520	truD	98718..99764 (+)	1047	WP_061056879.1	tRNA pseudouridine(13) synthase TruD	-
GO174_RS00525	surE	99757..100524 (+)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
GO174_RS00530	-	100517..101143 (+)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GO174_RS00535	nlpD	101143..102078 (+)	936	WP_020429687.1	murein hydrolase activator NlpD	-
GO174_RS00540	rpoS	102150..103136 (+)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
GO174_RS00545	mutS	103201..105762 (-)	2562	WP_158124307.1	DNA mismatch repair protein MutS	-
GO174_RS00550	pncC	105847..106335 (+)	489	WP_158124308.1	nicotinamide-nucleotide amidase	-
GO174_RS00555	recA	106508..107560 (+)	1053	WP_020330433.1	recombinase RecA	Machinery gene
GO174_RS00560	recX	107630..108088 (+)	459	WP_047459347.1	recombination regulator RecX	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=408980 GO174_RS00540 WP_020429689.1 102150..103136(+) (rpoS) [Vibrio fluvialis strain 2015AW-0233]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=408980 GO174_RS00540 WP_020429689.1 102150..103136(+) (rpoS) [Vibrio fluvialis strain 2015AW-0233]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTAGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGCTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887