Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GO175_RS21370 Genome accession   NZ_CP046856
Coordinates   1302191..1303372 (+) Length   393 a.a.
NCBI ID   WP_024375463.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1297191..1308372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS21355 - 1298004..1298993 (-) 990 WP_158148754.1 GTP-binding protein -
  GO175_RS21360 clcA 1299454..1300851 (+) 1398 WP_154182310.1 H(+)/Cl(-) exchange transporter ClcA -
  GO175_RS21365 - 1301016..1301972 (+) 957 WP_195714729.1 TDT family transporter -
  GO175_RS21370 cqsA 1302191..1303372 (+) 1182 WP_024375463.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GO175_RS21375 cqsS 1303408..1305456 (-) 2049 WP_154182314.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43544.44 Da        Isoelectric Point: 6.7319

>NTDB_id=408974 GO175_RS21370 WP_024375463.1 1302191..1303372(+) (cqsA) [Vibrio fluvialis strain F8658]
MKTDAKNNRLPEFIQDRLNFFVRDLIQSNNNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIRARLKKAIDDTHDSVFMS
AIFLQDDESKPSLEHQLAEFAHFDSCLLSQSGWNANTALLQTICAPGSNVYIDFFAHMSMWEGARYANATIHPFMHNNCD
HLLKQIKRHGPGIIVVDSIYSTIGTIAPLAELVAIAKETGSAILVDESHSLGTHGKNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNVNQCVPFVGYPAIFSSTILPYEIAALEATLDVIKSADERRERLFHNTHILSTGLNRLGINIRSQSQ
IIALETGDERNTEKVRDYLEDNGIFGAVFCRPATSKTKNIIRLSLTSSVTAEQIDRILSVCQNAVNRSDLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=408974 GO175_RS21370 WP_024375463.1 1302191..1303372(+) (cqsA) [Vibrio fluvialis strain F8658]
ATGAAAACTGATGCCAAAAATAATCGGTTACCTGAGTTTATTCAGGACCGTTTAAATTTCTTCGTTCGCGATTTAATTCA
AAGTAATAACAACGGTAAACATCTGGTATTAGGTAAACGCCCTTCACAAGGCGATATTGTTTTACAAAGCAACGATTACC
TCAGTCTGGCTAACCATCCGTTGATTCGTGCGCGTTTGAAAAAGGCCATCGACGATACTCATGACAGCGTCTTTATGTCG
GCGATTTTCCTGCAGGATGATGAGTCGAAACCAAGCCTGGAACATCAACTGGCAGAGTTCGCTCACTTTGATTCCTGCCT
GCTGTCGCAATCGGGCTGGAATGCCAATACCGCTTTGCTGCAAACCATCTGCGCACCAGGAAGTAATGTCTATATCGACT
TCTTTGCTCATATGTCTATGTGGGAAGGCGCTCGTTACGCGAATGCCACTATTCATCCGTTTATGCACAACAACTGCGAC
CATTTACTTAAGCAGATAAAACGCCATGGCCCGGGAATTATCGTCGTCGATTCAATCTACAGCACCATTGGCACCATTGC
GCCGTTAGCTGAATTAGTCGCGATCGCTAAAGAGACCGGCAGCGCTATTCTCGTTGATGAATCACACTCTCTTGGCACCC
ACGGTAAGAATGGCGCGGGTTTACTGGCAGAGTTAGGTTTATCTGATCAAGTGGATTTTATGACTGCGAGCCTGGCGAAA
ACGTTTGCTTATCGGGCGGGAGTTATCTGGGCAAATAATAACGTCAATCAGTGCGTTCCATTCGTGGGTTATCCGGCGAT
ATTCAGCTCAACAATTTTGCCTTATGAAATTGCAGCTCTCGAAGCAACGCTGGATGTGATTAAATCCGCCGATGAACGAC
GTGAGCGTTTATTTCATAATACACATATATTGTCTACGGGATTAAATAGACTTGGTATTAATATTCGCAGTCAATCGCAA
ATAATAGCGTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCCGCGATTATTTAGAAGATAACGGTATTTTTGGCGC
AGTATTTTGCCGACCAGCCACATCGAAAACTAAGAATATTATTCGATTGTCGTTAACCAGTTCTGTCACTGCTGAACAGA
TCGACCGTATTTTATCGGTCTGCCAAAATGCGGTAAACAGAAGCGACCTTTACTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

70.13

97.964

0.687

Multiple sequence alignment