Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GO175_RS19960 Genome accession   NZ_CP046856
Coordinates   960333..961430 (+) Length   365 a.a.
NCBI ID   WP_154183452.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 955333..966430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS19930 - 956080..956643 (-) 564 WP_154183607.1 hypothetical protein -
  GO175_RS19935 - 957175..957492 (-) 318 WP_020329287.1 DUF496 family protein -
  GO175_RS19940 - 957682..957879 (+) 198 WP_020329288.1 hypothetical protein -
  GO175_RS19945 - 957924..958559 (+) 636 WP_154183448.1 YceH family protein -
  GO175_RS19950 - 958570..958851 (+) 282 WP_143682552.1 GIY-YIG nuclease family protein -
  GO175_RS19955 - 958965..960122 (+) 1158 WP_154183450.1 conjugal transfer protein TraF -
  GO175_RS19960 luxP 960333..961430 (+) 1098 WP_154183452.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GO175_RS19965 luxQ 961452..964019 (+) 2568 WP_020433712.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GO175_RS19970 - 964025..964705 (-) 681 WP_154183455.1 flagellar brake protein -
  GO175_RS19975 - 964840..965364 (-) 525 WP_020329295.1 hypothetical protein -
  GO175_RS19980 - 965517..965891 (-) 375 WP_154183457.1 NirD/YgiW/YdeI family stress tolerance protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41581.87 Da        Isoelectric Point: 5.0163

>NTDB_id=408971 GO175_RS19960 WP_154183452.1 960333..961430(+) (luxP) [Vibrio fluvialis strain F8658]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTELLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=408971 GO175_RS19960 WP_154183452.1 960333..961430(+) (luxP) [Vibrio fluvialis strain F8658]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAAAAGACGTTGACGGAATTGCTTTCTAATGCGGTCAGAC
AATCGCCAGCAAGGCTGAATGTCAAACAAAGCAAGCCTGTGACCATTTCGGTTGTCTATCCGGGGCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGTTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCGCTGAAGAACAACACCGATTATCTGATCTTTA
CTCTCGACACTACGCGTCACCGCAAGTTTATCGAGCATGTTCTCAGCTCTTCTCCAACCAAATTGATTCTTCAGAACATC
ACCACTCCGGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTACCGCGAACACGTGCCTAAAGGCAGTAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCCACT
CAGGAGAGTGGTTACGAAGCAACGCTTAACATTCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
TGTGGCACTGGGCGCTGCGCAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTCAACGGTTGGGGCGGTGGTTCGG
CAGAGCTTGAAGCGCTGAATGAAGGGCATCTGGATGTGACCGTGATGCGCATCAACGACGATACGGGCATTGCAATGGCG
GAAGCCATCAAACGCGACCTCGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAGAAGA
TAGTTCGCAAAAAATCGATGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.959

100

0.71

Multiple sequence alignment