Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   GO175_RS23270 Genome accession   NZ_CP046855
Coordinates   3177127..3178101 (-) Length   324 a.a.
NCBI ID   WP_242014362.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 3172127..3183101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS15450 - 3173838..3174065 (-) 228 WP_020331223.1 FeoA family protein -
  GO175_RS15455 - 3174752..3177049 (-) 2298 WP_242014361.1 AraC family transcriptional regulator -
  GO175_RS23270 tfoS 3177127..3178101 (-) 975 WP_242014362.1 hypothetical protein Regulator
  GO175_RS15460 znuA 3178285..3179175 (-) 891 WP_024373824.1 zinc ABC transporter substrate-binding protein ZnuA -
  GO175_RS15465 znuC 3179258..3180046 (+) 789 WP_154184133.1 zinc ABC transporter ATP-binding protein ZnuC -
  GO175_RS15470 znuB 3180039..3180821 (+) 783 WP_032081017.1 zinc ABC transporter permease subunit ZnuB -
  GO175_RS15475 sucD 3180895..3181767 (-) 873 WP_020331217.1 succinate--CoA ligase subunit alpha -
  GO175_RS15480 sucC 3181767..3182933 (-) 1167 WP_020331216.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36027.86 Da        Isoelectric Point: 5.1233

>NTDB_id=408967 GO175_RS23270 WP_242014362.1 3177127..3178101(-) (tfoS) [Vibrio fluvialis strain F8658]
MSRLLLLLSLLSALFTFAINAQDKSPSIFYPLPTLSQGKVFIAQDLFLGDEGGIWIHDVHGRVVFYDGQNVLPRRGSLLA
GNPQQLAYAQNAFWTFMDNELYRTVPPGEPELVFSLTPGITIEKIGASAGYIWLTDETHFYTYHIATGEFQTYSLMTLFQ
LNQASKVVVNDAQMIYTKWVLATNAGVYLSNGQSFSHVQRSGKDYVETMFMSRRRDQLVVGTDDGALLIDINHPEQEPQK
VGNAPVFSIVETENEYWIGTDNGLLVHSVETGNTVKLEGNNADDYGLSSGRIYSLVNDKQGGSGLRRIKASAIFLVLVRN
LPVF

Nucleotide


Download         Length: 975 bp        

>NTDB_id=408967 GO175_RS23270 WP_242014362.1 3177127..3178101(-) (tfoS) [Vibrio fluvialis strain F8658]
TTGTCCCGATTATTGCTCCTCCTGAGCCTGCTGTCAGCGCTCTTCACATTCGCTATCAATGCGCAGGATAAAAGCCCATC
TATCTTTTATCCGTTGCCGACGTTGTCGCAAGGCAAGGTGTTTATTGCTCAGGATCTGTTCCTGGGTGATGAGGGTGGAA
TCTGGATTCACGACGTGCACGGCCGGGTTGTCTTCTATGACGGCCAAAATGTACTGCCACGTCGAGGCTCTCTACTTGCT
GGTAATCCACAACAACTCGCCTATGCGCAGAATGCATTTTGGACGTTCATGGATAATGAACTCTATCGCACCGTCCCTCC
TGGTGAACCCGAACTGGTATTCAGCCTCACGCCGGGGATAACAATCGAAAAGATTGGGGCATCGGCAGGCTACATCTGGC
TCACGGACGAAACCCATTTCTACACTTACCACATCGCAACCGGGGAATTTCAAACCTATTCTCTGATGACGCTTTTTCAG
CTCAATCAAGCCAGTAAAGTGGTCGTGAATGATGCACAAATGATTTACACCAAATGGGTACTGGCGACCAATGCCGGGGT
TTATCTTTCCAATGGGCAAAGTTTTTCCCATGTTCAACGTTCGGGAAAAGATTATGTTGAGACTATGTTTATGTCTCGCC
GGCGTGATCAGCTTGTTGTCGGAACCGACGATGGCGCATTGCTAATCGATATTAATCATCCGGAACAAGAGCCGCAAAAA
GTCGGGAATGCTCCGGTATTTTCTATCGTTGAAACTGAGAATGAATATTGGATTGGCACCGACAACGGTCTCTTGGTCCA
CTCCGTTGAAACGGGCAACACAGTTAAATTGGAAGGCAACAATGCAGACGACTACGGCTTATCGAGCGGGCGAATTTACT
CGTTGGTCAACGACAAGCAAGGGGGATCTGGATTGCGACGGATAAAGGCATCCGCTATTTTTCTCGTTTTAGTCAGAAAT
TTACCCGTGTTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

53.311

93.21

0.497

Multiple sequence alignment