Detailed information NTG0408965

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GO175_RS11125
• Genome accession: NZ_CP046855
• Coordinates: 2232374..2233798 (-)
• Length: 474 a.a.
• NCBI ID: WP_154184504.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain F8658
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2227374..2238798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO175_RS11105	-	2227441..2230152 (+)	2712	WP_154184505.1	EAL domain-containing protein	-
GO175_RS11110	cdd	2230199..2231086 (-)	888	WP_020432570.1	cytidine deaminase	-
GO175_RS11115	-	2231288..2231968 (-)	681	WP_020327589.1	LrgB family protein	-
GO175_RS11120	-	2231959..2232333 (-)	375	WP_020327588.1	CidA/LrgA family protein	-
GO175_RS11125	sbcB	2232374..2233798 (-)	1425	WP_154184504.1	exodeoxyribonuclease I	Machinery gene
GO175_RS11130	-	2234036..2234248 (+)	213	WP_154184503.1	hypothetical protein	-
GO175_RS11135	-	2234328..2235707 (-)	1380	WP_154184502.1	L-cystine transporter	-
GO175_RS11140	-	2235908..2236591 (-)	684	WP_047458859.1	NAD(P)H-binding protein	-
GO175_RS11145	-	2236976..2237587 (+)	612	WP_075988634.1	flavin reductase family protein	-
GO175_RS11150	cobT	2237601..2238629 (+)	1029	WP_154184499.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54429.87 Da
• Isoelectric Point: 5.2378

>NTDB_id=408965 GO175_RS11125 WP_154184504.1 2232374..2233798(-) (sbcB) [Vibrio fluvialis strain F8658]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELNITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=408965 GO175_RS11125 WP_154184504.1 2232374..2233798(-) (sbcB) [Vibrio fluvialis strain F8658]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCATATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGTATTGTGTGGCCGGAAAACGATGAAGGTTTTACC
AGCTTCAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGACGTGATTGC
GACCATTGAACTGGCGAAAAAAGTCAAAGCGGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTACCCATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGACGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGACGGATTCTTCTCTCCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGAATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACACTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.51	99.789	0.833