Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GO175_RS09170 Genome accession   NZ_CP046855
Coordinates   1815702..1817063 (+) Length   453 a.a.
NCBI ID   WP_158148428.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810702..1822063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS09150 rsxB 1811315..1811914 (-) 600 WP_020327943.1 electron transport complex subunit RsxB -
  GO175_RS09155 rsxA 1811914..1812495 (-) 582 WP_004726646.1 electron transport complex subunit RsxA -
  GO175_RS09165 uvrB 1813385..1815415 (+) 2031 WP_020431742.1 excinuclease ABC subunit UvrB -
  GO175_RS09170 luxO 1815702..1817063 (+) 1362 WP_158148428.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GO175_RS09175 luxU 1817070..1817408 (+) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  GO175_RS09180 - 1817397..1818287 (-) 891 WP_154184636.1 YvcK family protein -
  GO175_RS09185 moaA 1818598..1819587 (+) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  GO175_RS09190 moaB 1819659..1820171 (+) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  GO175_RS09195 moaC 1820181..1820660 (+) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  GO175_RS09200 moaD 1820657..1820902 (+) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  GO175_RS09205 moaE 1820904..1821359 (+) 456 WP_154184635.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50331.60 Da        Isoelectric Point: 5.5480

>NTDB_id=408957 GO175_RS09170 WP_158148428.1 1815702..1817063(+) (luxO) [Vibrio fluvialis strain F8658]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISVPKASVVPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=408957 GO175_RS09170 WP_158148428.1 1815702..1817063(+) (luxO) [Vibrio fluvialis strain F8658]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACTGGGCGTGAAGCGATCGAAAGTATCGCGCATCGCGAACCGGATCTCATTCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCCGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAATCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTTTATCGCACCATTGACTCTGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTCGACGCGGTGACAAACCGTTCATCGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAATTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGATTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTTAAACAATACGAATGGCC
AGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGTCGTGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.48

98.455

0.901

Multiple sequence alignment