Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GO175_RS07225 Genome accession   NZ_CP046855
Coordinates   1389090..1389608 (+) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain F8658     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384090..1394608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS07215 gshA 1386892..1388457 (+) 1566 WP_154184754.1 glutamate--cysteine ligase -
  GO175_RS07220 - 1388459..1389064 (+) 606 WP_154184753.1 hypothetical protein -
  GO175_RS07225 luxS 1389090..1389608 (+) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  GO175_RS07230 - 1389677..1390951 (-) 1275 WP_020330450.1 HlyC/CorC family transporter -
  GO175_RS07235 - 1391041..1391835 (-) 795 WP_020330452.1 inner membrane protein YpjD -
  GO175_RS07240 ffh 1392048..1393430 (+) 1383 WP_020330453.1 signal recognition particle protein -
  GO175_RS07245 rpsP 1393656..1393904 (+) 249 WP_020330454.1 30S ribosomal protein S16 -
  GO175_RS07250 rimM 1393932..1394486 (+) 555 WP_020330455.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=408955 GO175_RS07225 WP_020330449.1 1389090..1389608(+) (luxS) [Vibrio fluvialis strain F8658]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408955 GO175_RS07225 WP_020330449.1 1389090..1389608(+) (luxS) [Vibrio fluvialis strain F8658]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACTATTACAGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
GATGCAAGATGTTCTGAAGGTGGAAAGTCAGGACAAGATTCCTGAACTGAACGAATACCAGTGTGGTACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment