Detailed information NTG0408952

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GO175_RS07105
• Genome accession: NZ_CP046855
• Coordinates: 1367185..1368171 (+)
• Length: 328 a.a.
• NCBI ID: WP_158148055.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain F8658
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1362185..1373171

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO175_RS07070	ftsB	1362254..1362535 (+)	282	WP_020330423.1	cell division protein FtsB	-
GO175_RS07075	ispD	1362532..1363242 (+)	711	WP_158148053.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GO175_RS07080	ispF	1363245..1363721 (+)	477	WP_158148054.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GO175_RS07085	truD	1363753..1364799 (+)	1047	WP_024374198.1	tRNA pseudouridine(13) synthase TruD	-
GO175_RS07090	surE	1364792..1365559 (+)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
GO175_RS07095	-	1365552..1366178 (+)	627	WP_047459356.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GO175_RS07100	nlpD	1366178..1367113 (+)	936	WP_020429687.1	murein hydrolase activator NlpD	-
GO175_RS07105	rpoS	1367185..1368171 (+)	987	WP_158148055.1	RNA polymerase sigma factor RpoS	Regulator
GO175_RS07110	mutS	1368240..1370801 (-)	2562	WP_154184760.1	DNA mismatch repair protein MutS	-
GO175_RS07115	pncC	1370886..1371374 (+)	489	WP_154184759.1	nicotinamide-nucleotide amidase	-
GO175_RS07120	recA	1371547..1372599 (+)	1053	WP_024374201.1	recombinase RecA	Machinery gene
GO175_RS07125	recX	1372669..1373127 (+)	459	WP_154184758.1	recombination regulator RecX	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37652.38 Da
• Isoelectric Point: 4.4184

>NTDB_id=408952 GO175_RS07105 WP_158148055.1 1367185..1368171(+) (rpoS) [Vibrio fluvialis strain F8658]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRESLMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=408952 GO175_RS07105 WP_158148055.1 1367185..1368171(+) (rpoS) [Vibrio fluvialis strain F8658]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTACTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGTG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGCTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGAGCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	86.826	100	0.884