Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GO175_RS03550 Genome accession   NZ_CP046855
Coordinates   630334..631341 (-) Length   335 a.a.
NCBI ID   WP_020429332.1    Uniprot ID   A0AAX2LJL2
Organism   Vibrio fluvialis strain F8658     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 625334..636341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS03525 rraA 625975..626502 (-) 528 WP_020329402.1 ribonuclease E activity regulator RraA -
  GO175_RS03530 - 626578..627495 (-) 918 WP_154183940.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GO175_RS03535 hslU 627584..628915 (-) 1332 WP_020329400.1 HslU--HslV peptidase ATPase subunit -
  GO175_RS03540 hslV 628957..629511 (-) 555 WP_020329399.1 ATP-dependent protease subunit HslV -
  GO175_RS03545 ftsN 629647..630204 (-) 558 WP_024373673.1 cell division protein FtsN -
  GO175_RS03550 cytR 630334..631341 (-) 1008 WP_020429332.1 DNA-binding transcriptional regulator CytR Regulator
  GO175_RS03555 priA 631646..633847 (-) 2202 WP_154183938.1 primosomal protein N' -
  GO175_RS03560 rpmE 634093..634311 (+) 219 WP_020329395.1 50S ribosomal protein L31 -
  GO175_RS03565 - 634523..635800 (+) 1278 WP_024373675.1 malic enzyme-like NAD(P)-binding protein -
  GO175_RS03570 metJ 635877..636194 (-) 318 WP_020329393.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36914.45 Da        Isoelectric Point: 6.3516

>NTDB_id=408939 GO175_RS03550 WP_020429332.1 630334..631341(-) (cytR) [Vibrio fluvialis strain F8658]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPEAAVLCQFRQQGYQQALRRAGITRNPTYSMSGDFTFESGAKAVRQLLALPEPPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRSM

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408939 GO175_RS03550 WP_020429332.1 630334..631341(-) (cytR) [Vibrio fluvialis strain F8658]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTTTCGACGGCGACGGTCTCGCGCGCTCTGATGAATCCCGAAAA
AGTTTCAGCCTCAACCCGTAAGCGGGTCGAGGAGGCAGTTTTAGAAGCTGGCTATTCACCGAATTCTTTGGCCCGAAATC
TGCGCCGCAATGAGTCAAAAACCATTGTCGCGATAGTGCCGGATATCTGTGACCCTTATTACACAGAGATCATTCGTGGT
ATCGAAGATGCTGCAATGGAACACGGTTATCTGGTGCTGCTGGGCGACAGCGGGCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTTACCAAACAAGCGGACGGCATGTTACTGCTGGGGACGGACTTGCCGTTTGATGTGAGCAAACCCG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCGGAGCTTGAGCTACCTACGGTACACATTGATAAC
CTGACATCGGCGTTTGAAGCCGTGAACTATCTGACTCAGATGGGGCACAAACGTGTGGCACAAATCGCCGGACCGGAAGC
CGCGGTGCTGTGTCAGTTTCGTCAGCAAGGTTATCAGCAGGCGCTGCGTCGTGCGGGTATCACTCGCAATCCGACCTACA
GTATGAGTGGTGACTTTACTTTTGAGTCCGGAGCCAAAGCGGTGCGTCAATTATTGGCCCTGCCTGAGCCACCAACGGCT
ATCTTCTGTCACAACGATACCATGGCGATTGGCGCGATTCAGGAAGCGAAACGTCTGGGACTGCGCGTACCGCAGGATCT
CTCTGTGGTGGGCTTTGATGACATTCAATTCGCCCAGTACTGCGATCCACCGCTGACGACCATCTCTCAGCCTCGCTACG
AGATTGGCCGTCAGGCGATGCTGATGATGCTGGAATTGCTGCGTGGTCATGACGTGCGTGCCGGCTCACGTTTGCTGGAA
ACTCAGCTGGTGGTGCGTGAGAGTGCAGCGCCGCCTCGTTCGATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

94.277

99.104

0.934
  cytR Vibrio parahaemolyticus RIMD 2210633

90.691

99.403

0.901

Multiple sequence alignment