Detailed information NTG0408928

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GO175_RS01950
• Genome accession: NZ_CP046855
• Coordinates: 294489..297878 (+)
• Length: 1129 a.a.
• NCBI ID: WP_154184031.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain F8658
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 289489..302878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO175_RS01925	erpA	289885..290226 (-)	342	WP_020332030.1	iron-sulfur cluster insertion protein ErpA	-
GO175_RS01930	hemL	290535..291827 (+)	1293	WP_020332029.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GO175_RS01935	-	291897..292055 (-)	159	WP_154184033.1	hypothetical protein	-
GO175_RS01940	-	292092..293177 (+)	1086	WP_024373684.1	AI-2E family transporter	-
GO175_RS01945	rsmC	293262..294284 (+)	1023	WP_154184032.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GO175_RS01950	chiS	294489..297878 (+)	3390	WP_154184031.1	response regulator	Regulator
GO175_RS01955	-	298573..300243 (+)	1671	WP_020332024.1	ABC transporter substrate-binding protein	-
GO175_RS01960	-	300409..301395 (+)	987	WP_020332023.1	ABC transporter permease	-
GO175_RS01965	-	301398..302423 (+)	1026	WP_020332022.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127857.52 Da
• Isoelectric Point: 6.4909

>NTDB_id=408928 GO175_RS01950 WP_154184031.1 294489..297878(+) (chiS) [Vibrio fluvialis strain F8658]
MFRFNRKQKFKRLQNTLMLAFLVLSIPPLTVTAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVIDYLTAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGIDIDQAREHAQQRYVPGSGDQIKTSVLPESSSYVGSERYRLLHKRYHWAYMELLKRSDF
DDILLVDINGNVVYSIFKNANYGTNLLTGKFKDSNLGQTFRQLEKQVSEHRKTNEDYTPVVLSDFVDENGRQYAWMGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNSTSSMRTLLVGQDHRSRTLAYEQPEIDKSTQVIDWALNGSRSVGTYTNQAGEK
TIAAYAPINLKDLHWALVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
TMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPINAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDINRTAVNLSNATRLVLELSNHLLGKKPIRI
INQVAENPVWVSADAQRLEQVLYNLIGNAIKYTSEGKIVISANQVDNHIRVQVVDTGQGIPAEQLEHIFEPLIQAGHDTS
RYRQGAGLGLSISRQLIELMHGSLYVSSQPMVGTTFSFTLPIASEQEIAAAQLTQLPHFQAPEFTELDLPENHSIPENPN
GPLLLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLKAVAEEKPELLLLDIMMPGMSGYQVCEELRKTYDHAQLPVIM
LTALNQTDDRVRGFEAGANDYLSKPFNKQELAARIIAHLTASKAEQRRIENAELQKELKHRAMVEASLLETQGRLLEQLE
SAPEAIVCIREDHKIRFANEAASRLFKRSQEQIKRSNADELIAPKYLLVEQEHYCGNVDIFVDDIRQHVNADVLRLPEGA
GLQAMYIFNVGGSINAARIHNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKASGDSQSKQDLMRAVLVDAMTSA
LNYWEKVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILDHCQEQGPERTYIEVQRD
KLQKLLTSE

Nucleotide

• Length: 3390 bp

>NTDB_id=408928 GO175_RS01950 WP_154184031.1 294489..297878(+) (chiS) [Vibrio fluvialis strain F8658]
ATGTTTAGGTTCAATCGGAAGCAAAAGTTTAAGCGCCTGCAGAATACTCTTATGCTGGCGTTCCTGGTTCTCAGCATCCC
CCCTCTGACGGTGACGGCAATCTTTTTCCTTCAATCTCACAGTAAAGACTTGCAGGAACAAAGCACATCGCACCTTCTGT
CAGTGCGGGATACCAAACAGCAGCAAGTAATCGACTACCTCACGGCTAAAGAGTCTGAAGTGATGGGCTTTGTCCGCTCA
GAACTTGCTTACGCCAGTGGAGGTCGCTTCTATGGATTGGTCAACGCATTTCAGCGCTTGGGAATCGATATCGATCAGGC
GCGCGAGCATGCGCAGCAACGTTATGTACCGGGCTCCGGCGACCAAATCAAAACCTCCGTGTTACCAGAGTCGAGCAGTT
ACGTCGGCAGCGAACGCTATCGCTTGTTGCATAAACGCTACCACTGGGCGTATATGGAACTGCTTAAGCGTTCCGATTTT
GACGATATTCTGTTGGTCGATATCAACGGAAACGTGGTGTATTCCATTTTTAAAAATGCCAACTACGGCACCAACCTGCT
GACGGGCAAATTTAAAGACAGTAATCTGGGTCAAACCTTCCGCCAACTAGAAAAGCAGGTCAGCGAACACCGTAAAACCA
ATGAAGATTACACCCCTGTCGTACTGTCTGATTTTGTTGATGAAAATGGCCGTCAATATGCGTGGATGGGTGCACCAATC
ATTCAGCAAGGCTACTTGCACAGTTATGCGATGTTCCGCCTGCCCAATAATGGCATTACCAAGCTGATTGCAGATACCAA
CAGCACCTCTTCAATGCGCACTCTGTTGGTCGGCCAGGATCATCGCTCGCGTACCCTCGCTTACGAGCAACCAGAGATCG
ATAAGAGTACTCAAGTGATTGATTGGGCGCTGAACGGCAGTCGTTCTGTTGGCACTTATACTAATCAGGCCGGGGAAAAA
ACCATCGCCGCCTACGCCCCTATCAACCTCAAAGATTTGCATTGGGCACTGGTGGTTGAACTACCAGAAAAAGAGGCCTT
TGCGCGCGTCCGTCAGTTGGAGAAGCTGTTCATCTTCGCCATGCTGACCGCAATTATTTTGGTGGTGATCGCCTCACATT
ATCTGTCTAACTTCATTACATCTCCGCTCCTTAAACTGACCTGGGCAGCGGAACGTGTCTCCGCTGGCGACTTGGATGAA
ACCATGATCAACACCGATCGGCGTGATGAAATTGGTCGGTTGGCGGTGAGTTTTGAACGTATGCAACGCTCTATTCGCGA
GAAGATGCAACTGATTAAGGCGCAGAATAAAGAGTTGGAAAGCAATATTCAGGTCATTCGTAAACAGAACGATGAATTGC
AGTTGGCCAACAAACTGAAAGATGAGTTTCTCGCCACAACTTCGCATGAACTCAGAACGCCTTTGCATGGCATGATCGGA
ATTGCCGAGGCGCTGATTTCCGGCGCCAATGGCCCTATTAATGCGGCACACAAGTATCAGCTCGACATTATCATCAGTAG
CGGTCAACGACTGGCCACCTTGGTGGATGACTTGCTCGACTACCACAAAATGCGCTACGGCAATCTCGACATCAACAGGA
CTGCGGTTAATCTGTCCAATGCCACGCGTTTGGTGCTGGAACTGTCTAATCATCTGTTGGGCAAAAAGCCAATCCGCATT
ATTAACCAAGTCGCCGAAAATCCGGTGTGGGTATCTGCCGATGCCCAGCGTTTGGAACAGGTGTTGTACAACCTGATCGG
CAACGCCATCAAATACACCTCGGAAGGTAAGATTGTCATCTCAGCCAATCAAGTGGATAACCATATTCGCGTTCAGGTCG
TGGATACCGGGCAAGGTATTCCGGCCGAACAGCTGGAACACATTTTTGAACCTCTGATTCAAGCCGGACATGACACTAGC
CGCTATCGTCAGGGGGCAGGACTGGGACTCTCCATCAGCCGTCAGTTAATTGAGTTGATGCATGGCTCGCTGTATGTCAG
CAGCCAACCTATGGTTGGCACTACCTTTAGTTTCACCCTGCCAATCGCGTCAGAACAAGAGATTGCTGCCGCACAACTGA
CGCAGCTACCCCATTTCCAGGCTCCTGAATTTACGGAACTGGATCTGCCTGAGAATCATAGCATTCCGGAAAATCCGAAC
GGCCCACTGCTGTTAGTCGCGGATGATGAGCCGGTTAACTTACGTGTTCTGGACAGCTTCCTGCGTTTAGAAGGCTATCG
TGTACGCACCGCACAGGATGGCAATGAAGTGTTGAAAGCTGTGGCTGAAGAGAAACCAGAGCTGCTATTACTCGACATCA
TGATGCCCGGTATGAGCGGTTATCAGGTTTGTGAAGAGCTGCGTAAAACGTATGATCACGCTCAATTACCAGTAATTATG
CTGACCGCTCTGAATCAAACCGACGATCGCGTACGAGGCTTTGAAGCGGGTGCCAACGACTACCTGTCCAAACCTTTCAA
CAAACAGGAACTGGCTGCACGTATTATCGCGCACCTGACAGCAAGCAAAGCAGAACAACGTCGGATTGAAAACGCCGAGT
TGCAGAAAGAATTGAAGCACCGCGCGATGGTTGAGGCCAGTTTGCTGGAAACACAAGGACGTTTGTTGGAACAGCTGGAA
TCGGCACCGGAAGCCATTGTTTGTATTCGTGAAGATCACAAAATCCGCTTTGCCAATGAAGCTGCTTCGCGCCTGTTTAA
ACGCAGTCAGGAGCAAATCAAGCGTTCTAACGCAGATGAGTTGATCGCTCCGAAGTATCTGCTGGTCGAACAGGAACATT
ATTGCGGCAACGTCGATATTTTTGTTGATGATATTCGGCAACACGTCAATGCTGATGTCCTCCGTCTGCCAGAAGGCGCC
GGATTACAGGCAATGTATATCTTTAATGTGGGTGGTAGCATTAACGCTGCGCGTATTCATAACCTTGAAACCGCCGTTGA
AGCCCTGTCGAGCTATGCCTTTGAAGGCGACAAGGATAAGCTGCAGCAACTCAAAGAACTGGGGGGAGAATTTACCCGTC
TGGCAGACAAAGCCTCAGGTGACAGCCAATCTAAGCAGGACTTGATGCGCGCTGTCTTGGTGGATGCGATGACATCAGCC
CTCAACTATTGGGAGAAAGTTTCCGGGCAAAGTAAATTCACGTTCGCAGAACAAAGTGGGTTATGGCGCGTCTATCTGGA
CCGAAGCACGCTTCAGACCCGCACACTCGACAAGTATCTGCGTATCGAAACACTGCCTAAAACACCGCGGTGGCGCACGG
TACTCAATTCGCTGGATTACATTCTCGACCACTGTCAGGAACAGGGGCCTGAACGTACCTACATTGAAGTACAACGCGAT
AAACTGCAAAAGCTGCTCACCTCTGAATAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• Response regulator receiver domain (Response_reg) (725-835)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	84.854	100	0.849