Detailed information NTG0408906

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPY11_RS12175
• Genome accession: NZ_CP046851
• Coordinates: 1929355..1932732 (+)
• Length: 1125 a.a.
• NCBI ID: WP_154124714.1
• Uniprot ID: -
• Organism: Grimontia hollisae strain F9489
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1924355..1937732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY11_RS12155	erpA	1924823..1925164 (-)	342	WP_040528752.1	iron-sulfur cluster insertion protein ErpA	-
GPY11_RS12160	hemL	1925397..1926686 (+)	1290	WP_005503952.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPY11_RS12165	-	1926932..1928014 (+)	1083	WP_158174942.1	AI-2E family transporter	-
GPY11_RS12170	rsmC	1928096..1929121 (+)	1026	WP_154124715.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPY11_RS12175	chiS	1929355..1932732 (+)	3378	WP_154124714.1	response regulator	Regulator
GPY11_RS12180	-	1933415..1935097 (+)	1683	WP_114995952.1	ABC transporter substrate-binding protein	-
GPY11_RS12185	-	1935217..1936203 (+)	987	WP_005503958.1	ABC transporter permease	-
GPY11_RS12190	-	1936206..1937234 (+)	1029	WP_005503959.1	ABC transporter permease	-

Sequence

Protein

• Length: 1125 a.a.
• Molecular weight: 127083.02 Da
• Isoelectric Point: 5.6731

>NTDB_id=408906 GPY11_RS12175 WP_154124714.1 1929355..1932732(+) (chiS) [Grimontia hollisae strain F9489]
MQKKQKFKRLKHTLMLAFLVLSITPLTLLAIFFLESHSSDLEQQSTTHLSFLRDNKKEQIISYFAARQSEVKSFSRSELA
TASGGRFYGLIAAFHQLGDTEKEARKAARERYAVSPPQNQAQTPQDANFIGSERYRLLHKRYDWAYKEHLKRSDFSDILL
VDIHGNVAYSALKDDVFAANLLSEQWRDTAIGKTFAELHDIANTPLVDDDDMPIVFSDFSQQENGEMVAWFAAPIIQQGY
LHSYVLFRLTNTTLDKMLKTSPQEKGYISTLLVGSDMIPRNIVSTERLTPINSNAIEAALSGLRDVGSFLSPNNERVLGA
YAPVQIQDKTWALILELPEEEAFARIYQLEKIFVVVMVIAILLVVIGSHLLSHSITAPLLKLTWAAEQVSAGDLDQKINN
TDREDEIGRLAVSFARMQRSVRDKLALIREQNKELEQNIQLIKQKNEELQQADRMKDDFLATTSHELRTPLHGMVGIAES
MLAGAEGPLPERQKHQLRMIINSGERLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRLLGGKPVRIINQV
PIDLPLVRADGQRLEQVLYNLIGNAIKYTDEGKIIISATVLQGQLRIQVVDTGQGIPSDQLEYIFEPLTQARESNTQYRQ
GAGLGLSISRQLIDIMGGQLYVSSQPMVGTTFSFTLPLATEEDKAKTRLANNVHFAAPHAELEPVDYTQLPENPDGPLIL
VVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIEFITMEKPALMLLDVMMPELSGYEVCTHLRERYSRAELPIIMLSALG
QVQDKVKGFDAGANDYLTKPFNKDELSARIRAYINASLTEQEREQNRALQKEIHFREQVEAGLREVQNRLLGMLDTASEG
IICVQEGGRITYANDACSEIFHLSAEQIERHQLDDFLAMALPEPEASRGHYSGQFRFKVEGDIVNIETDLITLPESSGLQ
MMLILNTGKKASSHRVHLLENAVSALADYAYDGDLEKLQQLRELGGEFTRMADRFSGNKPDKASILRETLVKVMTMTLSY
WSHSTGKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLHVETVPKSPRWRTVISTIDFVLERCSDKSKERSELEILRERLQ
KLIAR

Nucleotide

• Length: 3378 bp

>NTDB_id=408906 GPY11_RS12175 WP_154124714.1 1929355..1932732(+) (chiS) [Grimontia hollisae strain F9489]
ATGCAAAAAAAACAGAAATTCAAGCGATTGAAGCACACGCTGATGCTCGCTTTTCTGGTGCTGAGTATTACGCCTCTCAC
CCTGCTGGCGATCTTCTTTTTGGAATCTCACAGCAGCGATCTCGAACAACAGAGCACCACGCACCTTTCCTTCCTTCGTG
ACAATAAGAAAGAGCAAATCATCAGTTATTTTGCGGCGCGTCAGTCCGAAGTAAAATCCTTCAGCCGTTCTGAACTGGCT
ACTGCCAGCGGTGGCCGTTTTTATGGTTTGATCGCCGCTTTCCATCAGCTTGGCGATACGGAAAAAGAAGCACGCAAAGC
GGCACGTGAACGATACGCGGTTTCCCCACCCCAGAACCAGGCCCAAACACCCCAAGATGCCAACTTCATTGGTAGCGAAC
GCTATCGCCTGCTTCACAAACGCTATGACTGGGCCTACAAGGAGCACCTGAAGCGTTCGGATTTTTCTGACATCCTGCTT
GTCGATATCCACGGCAATGTGGCGTATTCCGCATTGAAAGATGATGTGTTTGCCGCCAATCTGTTGTCTGAACAATGGCG
TGATACCGCCATCGGCAAAACCTTTGCTGAACTCCATGATATTGCCAATACCCCGTTGGTTGATGACGACGATATGCCTA
TCGTTTTCAGCGATTTTTCCCAGCAGGAAAACGGCGAGATGGTGGCCTGGTTTGCTGCCCCCATCATCCAGCAGGGATAT
CTACACAGCTATGTGTTGTTCCGGCTGACAAATACAACACTGGATAAGATGCTAAAAACGTCCCCGCAGGAAAAGGGGTA
TATCAGCACCCTCCTGGTGGGAAGCGACATGATCCCGCGAAATATTGTCAGCACAGAAAGGCTCACCCCAATCAATAGCA
ACGCCATTGAAGCGGCGCTATCCGGGCTTCGTGATGTCGGCAGTTTCCTCAGCCCCAACAATGAGCGTGTACTCGGCGCT
TACGCACCGGTTCAGATACAGGATAAAACCTGGGCACTTATTCTCGAATTACCGGAAGAGGAGGCATTCGCCCGCATCTA
TCAGCTGGAAAAAATTTTTGTGGTCGTCATGGTGATCGCTATCTTACTGGTCGTCATCGGCTCACACCTTCTGTCTCATT
CTATTACCGCACCACTGTTGAAGCTCACCTGGGCTGCAGAGCAAGTCTCAGCAGGCGATCTGGACCAGAAGATAAACAAT
ACCGATCGTGAAGATGAAATTGGCCGGCTTGCGGTCAGCTTTGCCCGTATGCAGCGCTCAGTACGTGACAAACTGGCGCT
TATTCGCGAGCAAAATAAGGAGCTTGAGCAAAACATTCAGCTTATCAAGCAAAAGAATGAAGAGTTACAGCAAGCAGATC
GAATGAAGGATGACTTCCTTGCCACTACATCCCATGAGCTTCGCACACCGCTTCACGGCATGGTAGGGATTGCTGAATCG
ATGCTTGCCGGGGCTGAAGGGCCACTACCGGAGCGCCAGAAGCACCAGCTTCGTATGATCATCAACAGCGGTGAACGCCT
GTCTAACCTGGTAGATGATCTGCTCGATTACCATAAGATGCGCTATGGCGATGTGGAGATCTCCCCACAAGCCGTTGACA
CTGCCAATGCCGTACGTCTGGTGATTGAACTTTCCAGCCGCCTGTTGGGCGGAAAACCGGTACGCATCATCAACCAGGTT
CCCATTGACCTGCCACTTGTCAGGGCTGATGGACAGCGGCTCGAACAAGTGCTTTACAACCTGATAGGCAATGCCATTAA
GTATACTGACGAAGGGAAAATCATCATTTCCGCGACGGTACTGCAAGGGCAGTTACGGATCCAGGTGGTGGATACCGGTC
AGGGCATTCCTTCCGATCAGTTGGAATACATCTTTGAACCACTGACGCAGGCCAGAGAATCCAACACCCAGTATCGCCAG
GGCGCCGGGCTCGGCCTTTCAATCAGTCGTCAATTGATTGATATCATGGGCGGCCAGTTGTATGTCTCCAGCCAGCCTAT
GGTCGGCACAACATTCAGCTTCACCTTGCCCCTAGCCACCGAAGAAGATAAAGCAAAAACACGTCTTGCCAACAACGTGC
ACTTTGCTGCCCCACATGCCGAGCTTGAGCCGGTTGATTACACCCAGTTGCCGGAAAATCCGGACGGCCCCCTTATTCTG
GTTGTCGACGATGAACCAGTGAACCTGCAAATTCTCAACAACTTCCTGCGTCTGGAGGGGTATCGTGTCAAGGCCGTAGA
AAATGGTCGGCAAGCCATTGAGTTCATCACCATGGAAAAACCGGCACTGATGCTGCTTGACGTGATGATGCCAGAGCTCA
GCGGGTATGAAGTATGCACTCACCTTCGTGAGCGCTACAGTCGTGCTGAGTTGCCGATCATTATGCTCTCTGCACTGGGA
CAGGTTCAGGATAAAGTGAAGGGCTTTGATGCCGGTGCCAACGATTACCTGACTAAGCCGTTTAATAAAGATGAGCTTAG
TGCCCGCATCCGTGCCTATATTAATGCCTCCCTGACAGAACAGGAGCGGGAACAAAACCGTGCCCTGCAAAAAGAAATCC
ACTTCAGGGAGCAAGTGGAAGCGGGCCTTAGGGAGGTGCAAAACCGACTGCTCGGCATGCTGGATACCGCCTCGGAAGGC
ATTATCTGCGTACAGGAAGGTGGACGTATAACCTATGCCAACGATGCTTGCAGTGAGATTTTCCATTTAAGTGCCGAGCA
GATTGAGCGTCACCAACTGGATGACTTCCTTGCCATGGCACTACCTGAGCCAGAAGCAAGCCGGGGTCATTACAGTGGTC
AGTTCAGGTTCAAGGTAGAAGGCGACATTGTCAATATTGAGACCGATCTCATCACGTTGCCAGAGTCATCAGGCCTGCAG
ATGATGCTTATCCTGAACACCGGTAAAAAAGCCTCATCACACCGGGTACACCTGCTGGAGAATGCGGTATCAGCCCTCGC
CGATTATGCTTATGACGGCGATCTGGAGAAACTGCAACAACTCAGGGAACTGGGTGGGGAGTTTACCCGTATGGCAGACC
GTTTCTCAGGTAACAAGCCGGACAAAGCCAGTATACTGCGTGAAACCTTAGTAAAGGTCATGACCATGACACTGAGCTAC
TGGAGCCACTCAACCGGAAAGACCAAGTTTGATCTTGCAGAAGAAAGCGGCTTGTGGCGTGTGTATCTGGACCGAAGCAC
CCTACAAACCCGGACACTGGATAAATACCTGCACGTCGAGACAGTACCCAAATCCCCGCGCTGGCGCACGGTGATCAGCA
CGATTGACTTTGTATTGGAACGCTGCAGCGATAAGAGCAAAGAGCGAAGCGAACTCGAAATACTCAGGGAGCGTCTCCAA
AAACTGATTGCCCGCTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (719-831)

• PAS domain (PAS_8) (869-925)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (570-679)

• His Kinase A (phospho-acceptor) domain (HisKA) (455-521)

• HAMP domain (HAMP) (370-422)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	56.394	100	0.564