Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GPX94_RS09880 Genome accession   NZ_CP046848
Coordinates   2120869..2122290 (-) Length   473 a.a.
NCBI ID   WP_078924770.1    Uniprot ID   A0A1T4KWV9
Organism   Vibrio cincinnatiensis strain F8054     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2115869..2127290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS09860 - 2115945..2118644 (+) 2700 WP_154115544.1 EAL domain-containing protein -
  GPX94_RS09865 cdd 2118729..2119616 (-) 888 WP_078924772.1 cytidine deaminase -
  GPX94_RS09870 - 2119775..2120455 (-) 681 WP_154115545.1 CidB/LrgB family autolysis modulator -
  GPX94_RS09875 - 2120455..2120838 (-) 384 WP_115173989.1 CidA/LrgA family protein -
  GPX94_RS09880 sbcB 2120869..2122290 (-) 1422 WP_078924770.1 exodeoxyribonuclease I Machinery gene
  GPX94_RS09885 - 2122448..2123818 (-) 1371 WP_078924769.1 L-cystine transporter -
  GPX94_RS09890 - 2123985..2124674 (-) 690 WP_154115546.1 NAD(P)H-binding protein -
  GPX94_RS09895 cobT 2124835..2125899 (+) 1065 WP_154115547.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  GPX94_RS09900 - 2125899..2126711 (+) 813 WP_078924766.1 adenosylcobinamide-GDP ribazoletransferase -
  GPX94_RS09905 cobU 2126696..2127244 (+) 549 WP_078924765.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54435.14 Da        Isoelectric Point: 5.4541

>NTDB_id=408880 GPX94_RS09880 WP_078924770.1 2120869..2122290(-) (sbcB) [Vibrio cincinnatiensis strain F8054]
MQQHQPTFFFFDYETWGTNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPCDYLPGPEAALITKITPQKVMEEGLPEPE
FIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIHWPENNDGFTS
FKLEDLSKRNGIEHENAHDAMADVIATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGMLGRECQYT
SWVVPVAWHPTNQNAVIVVDLAKDPEPLLTLSAEQLHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTADNAAV
IGIDREQCLANLALLRQHPEIREKLVALFAIEREFPATADVDSQLYDGFFSPSDKAGMEIIRSSHPELLGSLDIQFSDPR
IAPLLFRYRARHYPWTLNDTEQRRWANHCRDYFETCLPSYMLNLENLVQEHQSDEKKMAILKSVYRYVESLAC

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=408880 GPX94_RS09880 WP_078924770.1 2120869..2122290(-) (sbcB) [Vibrio cincinnatiensis strain F8054]
ATGCAACAGCACCAGCCAACTTTCTTCTTTTTCGATTATGAGACGTGGGGAACGAATCCAGCGAAAGATCGACCCAGCCA
GTTTGCCGGTGTCCGTACTGATATGGATTTCAATATTATCGGTGAGCCGTTAGTGATTTACTGTCAATTACCTTGTGATT
ATCTACCGGGGCCGGAGGCTGCGTTAATCACCAAAATTACACCACAAAAGGTAATGGAGGAAGGGCTACCTGAGCCTGAA
TTTATTGCTCGAATTCACGCAGAACTCGCCACCCCCAATACAACTAGCCTAGGTTATAACAGCATTCGTTTTGATGATGA
GGTGACGCGCTATACCTGTTATCGCAACTTTCTTGACCCTTATGCGTGGAGTTGGCAAAACGGTAACTCTCGCTGGGATC
TATTAGATGTAATGCGGGCCTGCCACGCACTACGTCCGGAAGGGATCCACTGGCCAGAAAATAACGATGGGTTTACCAGC
TTTAAATTAGAAGACCTATCAAAAAGAAACGGCATTGAACATGAAAATGCCCACGATGCAATGGCCGATGTCATCGCTAC
TATTGAACTTGCAAAAAAAATCAAAGCCGCCCAACCTAAGCTTTTCGATTATTTTTTATCAATGCGCCATAAACGCAAGC
TGATCGACCTGGTCGATATTGTCAATATGACACCGTTAATGCATGTTTCTGGCATGTTGGGTCGAGAATGCCAATACACC
AGTTGGGTTGTTCCAGTGGCGTGGCATCCTACCAACCAGAATGCTGTTATTGTGGTCGATTTAGCCAAAGATCCTGAGCC
GTTGTTAACGCTCTCTGCCGAGCAGTTGCATCAACGTCTTTACACCAAACGTGAGGAATTGGCTGAAGATGAATTACCAG
TGCCCATCAAATTGGTACATCTCAATAAGTGTCCGATTTTAGCGCCTGCAAAAACCTTAACCGCAGACAATGCCGCCGTG
ATCGGGATTGACCGTGAACAATGCTTAGCGAATCTCGCCTTACTTCGTCAGCATCCAGAAATTCGAGAAAAATTAGTTGC
CCTATTTGCGATTGAACGAGAGTTTCCCGCCACAGCTGATGTCGATAGCCAACTGTATGATGGATTCTTTTCCCCGTCCG
ACAAAGCCGGTATGGAAATTATACGCTCAAGCCATCCTGAATTACTCGGCAGCTTAGATATTCAATTTAGTGACCCAAGA
ATAGCTCCACTGCTCTTTCGATATCGCGCTCGTCATTATCCTTGGACACTGAATGACACAGAGCAACGTCGCTGGGCTAA
TCACTGTCGAGATTATTTTGAAACATGCCTACCCAGCTATATGCTTAATTTAGAAAACTTAGTGCAAGAGCACCAAAGTG
ATGAGAAAAAAATGGCCATACTCAAATCTGTTTATCGCTATGTAGAATCTTTAGCTTGCTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4KWV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.78

99.789

0.816

Multiple sequence alignment