Detailed information NTG0408878

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPX94_RS06745
• Genome accession: NZ_CP046848
• Coordinates: 1457005..1460394 (-)
• Length: 1129 a.a.
• NCBI ID: WP_078926078.1
• Uniprot ID: -
• Organism: Vibrio cincinnatiensis strain F8054
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1452005..1465394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX94_RS06730	-	1452391..1453416 (-)	1026	WP_154115297.1	ABC transporter permease	-
GPX94_RS06735	-	1453419..1454405 (-)	987	WP_078926076.1	ABC transporter permease	-
GPX94_RS06740	-	1454565..1456235 (-)	1671	WP_154115298.1	ABC transporter substrate-binding protein	-
GPX94_RS06745	chiS	1457005..1460394 (-)	3390	WP_078926078.1	response regulator	Regulator
GPX94_RS06750	rsmC	1460593..1461618 (-)	1026	WP_154115299.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPX94_RS06755	-	1461684..1462769 (-)	1086	WP_154115300.1	AI-2E family transporter	-
GPX94_RS06760	hemL	1463083..1464375 (-)	1293	WP_154115301.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPX94_RS06765	erpA	1464747..1465088 (+)	342	WP_078926152.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 128239.19 Da
• Isoelectric Point: 6.4363

>NTDB_id=408878 GPX94_RS06745 WP_078926078.1 1457005..1460394(-) (chiS) [Vibrio cincinnatiensis strain F8054]
MFRFNRKQKFKRLQNTLMLAFLVLSLTPLTVTALFFLHSHSKDLQEQSTSHLLSVRDTKQQQVIDYLSAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGDDIEQARLHAQQRYIPGSGDQIKTSVLPKSSSYVGSERYRLLHKRYHSAYLELLKRSDF
DDILLVDLNGNVVYSIYKYDNYGTNLLTGRYKSSNLGTTFQHLEQIVTENRKLNEDYTPVVLSDFIEEEGQQYAWMGAPI
IQQGYLHSYAMFRLPNNGITKLISENNSDSSKRTLLVGQDQRSRILAHNQVDIKTSTDVINMALNGGRAVGTYKNTLGEK
HIAAYAPIKVKELDWAIVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDK
AIINTERQDEIGRLAVSFERMQRSIREKIQLIKSQNIELENNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPINGAHKYQLDIIISSGQRLANLVDDLLDYHKMRYGHLDMELRAVNLASATQLVLALSSHLLGKKQIRI
INQVAENPIWVCADAQRLEQVLYNLIGNAIKYTSEGKIVISATQQEDHVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDSS
RYRQGAGLGLSISRQLIGLMDGSLYVSSQPMVGTTFSFTLPLATSEQIEHAQQTQMAHFQIPELTELEKDEENHLPENPD
GPLLLVADDEPVNLRVLKSFLRLEGYRVKTVQEGNEVLSSVKEEQPELLLLDIMMPGMNGYQICEQLRQDYDHAQLPIIM
LTALNQSDDRLKGFEVGANDYLSKPFNKQELAARIQAHLTASKAEQRRIENARLQKELKQRAMVEASLLETQGRLLEQLD
SAPEAILCLREDNKIRFANESAARLFKRSQEQLKRSDAEELIAPKYLLVEQEHYCGNIDIYVDDIRQHISADILRLPEGS
GFKAMYIFNVGGNINAARIHNLETALEALSSYAFEGDKDKLQQLKELGGEFTRIAEKVAGENQSKQELMRSVLVEAMSSA
LDYWEKVTGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCKEQSPERTYIEVQRD
KLQKLLTTD

Nucleotide

• Length: 3390 bp

>NTDB_id=408878 GPX94_RS06745 WP_078926078.1 1457005..1460394(-) (chiS) [Vibrio cincinnatiensis strain F8054]
ATGTTCAGGTTTAATCGAAAACAGAAATTTAAACGTCTGCAAAATACGTTAATGTTGGCATTTTTAGTGCTTAGCCTTAC
CCCTCTCACTGTGACGGCGCTGTTTTTCCTTCATTCTCACAGCAAAGATTTACAGGAACAGAGCACTTCTCATCTGCTAT
CTGTACGCGATACCAAGCAACAACAAGTGATTGACTACCTAAGCGCGAAAGAATCTGAAGTGATGGGCTTTGTTCGTTCA
GAACTGGCTTATGCAAGTGGTGGGCGATTCTATGGCTTAGTCAACGCCTTTCAACGGTTAGGTGATGATATTGAGCAAGC
CCGCCTACATGCCCAACAACGCTATATCCCCGGATCCGGCGATCAAATCAAAACCTCTGTACTGCCTAAATCAAGCAGTT
ATGTGGGCAGTGAACGTTATCGCCTACTGCACAAACGCTACCATTCCGCTTATCTTGAACTTCTGAAACGCTCGGATTTC
GACGACATTTTATTGGTCGACCTCAATGGTAACGTGGTCTATTCCATTTACAAATATGACAATTATGGTACTAACCTACT
CACTGGGCGCTATAAAAGTTCGAACCTAGGAACCACATTTCAGCATTTAGAGCAAATCGTCACAGAAAATCGGAAGCTCA
ATGAAGATTATACCCCCGTCGTGTTATCCGATTTTATTGAAGAAGAGGGGCAGCAATACGCTTGGATGGGTGCCCCCATT
ATTCAACAAGGCTACCTACACAGTTATGCTATGTTTCGGCTGCCAAATAATGGGATAACAAAACTCATTTCTGAAAATAA
CAGCGATTCCTCAAAACGCACATTGCTGGTCGGGCAGGATCAGCGATCACGAATCCTAGCTCATAACCAAGTCGATATAA
AAACCAGTACCGATGTCATCAATATGGCACTCAATGGCGGTCGAGCCGTTGGAACCTATAAAAATACCTTAGGCGAGAAA
CACATTGCCGCCTATGCCCCGATAAAAGTGAAAGAGTTAGACTGGGCTATAGTCGTAGAGCTACCAGAGAAAGAAGCCTT
TGCGCGAGTTCGTCAATTAGAGAAATTGTTTATTTTTGCAATGCTCACCGCCATAATCCTCGTCGTGATCGCCTCTCACT
ACCTATCTAACTTCATCACCTCTCCGTTATTGAAACTGACATGGGCGGCCGAACGGGTTTCAGCCGGAGATCTGGATAAA
GCCATCATTAATACTGAACGCCAAGATGAAATTGGCCGGTTGGCGGTGAGCTTTGAACGAATGCAACGTTCAATTCGAGA
AAAAATTCAACTGATCAAATCGCAAAACATTGAGTTAGAAAATAATATCCAAGTCATCCGTAAACAAAATGACGAATTAC
AGTTAGCCAATAAACTTAAAGATGAGTTTCTTGCTACCACTTCACATGAATTACGTACCCCACTACATGGCATGATTGGC
ATCGCGGAAGCATTGATTTCTGGGGCAAATGGTCCCATTAATGGCGCACATAAGTATCAATTAGATATTATCATCAGCAG
CGGGCAACGTTTGGCTAATTTGGTAGATGATCTATTGGATTACCATAAAATGCGTTATGGCCATTTAGATATGGAGTTAC
GTGCAGTCAACCTTGCAAGTGCAACTCAACTCGTCTTAGCGCTCTCTAGCCATCTATTGGGGAAAAAACAAATTCGAATT
ATTAATCAAGTCGCTGAAAACCCCATTTGGGTGTGTGCAGATGCTCAGCGTCTTGAACAAGTACTCTATAACCTTATCGG
TAATGCGATTAAATATACCTCTGAAGGAAAAATTGTCATTTCCGCCACTCAGCAAGAAGATCACGTTCGAGTGCAAGTCG
TTGATACGGGGCAAGGCATCCCCGCTGAGCAACTGGAACATATTTTTGAACCTCTTATTCAAGCAGGGCACGATAGTAGC
CGTTACCGTCAAGGCGCGGGATTAGGCCTATCCATTAGCCGCCAATTAATCGGATTAATGGATGGATCTTTATATGTCAG
CAGCCAACCAATGGTGGGGACCACCTTTAGCTTCACTCTCCCACTTGCGACATCAGAACAGATAGAGCATGCCCAACAAA
CCCAAATGGCACATTTCCAAATACCAGAGTTAACGGAACTAGAGAAAGATGAAGAAAATCATCTGCCAGAAAATCCTGAT
GGACCTCTTCTTCTGGTTGCCGATGATGAACCCGTCAATTTACGGGTTCTCAAAAGTTTTTTACGCTTAGAAGGTTATCG
GGTCAAAACCGTACAAGAAGGCAATGAAGTACTATCAAGTGTAAAAGAAGAACAGCCAGAACTATTACTGCTCGATATCA
TGATGCCAGGCATGAACGGTTATCAAATCTGCGAACAACTACGCCAAGATTACGACCACGCTCAACTGCCCATCATTATG
CTCACCGCACTAAACCAGAGTGATGACCGATTGAAAGGCTTTGAAGTCGGTGCTAATGATTACTTATCCAAACCTTTCAA
TAAACAAGAGTTAGCCGCTCGTATTCAAGCACATTTAACCGCAAGTAAAGCTGAACAACGACGAATAGAAAATGCTCGGT
TACAAAAAGAACTAAAACAACGCGCCATGGTAGAAGCCAGCCTGCTTGAAACCCAAGGGCGGCTGTTAGAACAACTAGAT
TCCGCTCCCGAGGCCATTTTATGCCTTCGAGAAGATAATAAAATTCGCTTTGCGAATGAGTCTGCCGCCCGACTATTTAA
GCGAAGCCAAGAGCAACTGAAACGCTCCGATGCTGAAGAACTGATTGCCCCCAAATATTTACTGGTCGAACAAGAACACT
ACTGTGGCAATATTGATATCTATGTCGATGATATCAGACAGCATATTTCGGCCGACATCCTTCGACTTCCTGAAGGATCT
GGCTTTAAAGCTATGTACATCTTTAATGTCGGAGGCAATATTAATGCAGCCAGAATCCATAACCTAGAAACGGCACTAGA
AGCTTTATCCAGTTATGCCTTTGAAGGAGATAAAGACAAACTTCAGCAATTAAAAGAATTAGGAGGAGAATTTACTCGTA
TTGCTGAAAAAGTAGCCGGAGAGAACCAATCAAAACAGGAATTAATGCGATCAGTATTGGTCGAAGCGATGAGTAGTGCT
CTTGATTACTGGGAAAAAGTGACAGGGCAAAGTAAATTCACTTTTGCTGAACAAAGTGGTTTATGGCGCGTCTATTTAGA
CCGTAGTACACTGCAAACCCGTACATTGGATAAATACCTGCGAATTGAAACTCTGCCGAAGACTCCTCGTTGGCGTACCG
TACTAAATTCACTGGATTATATTCTCGAACATTGCAAAGAGCAGTCCCCAGAGCGAACCTATATTGAAGTACAAAGAGAT
AAACTTCAAAAGCTACTCACCACAGACTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	81.754	100	0.818