Detailed information NTG0408855

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPX94_RS01915
• Genome accession: NZ_CP046848
• Coordinates: 419801..420790 (-)
• Length: 329 a.a.
• NCBI ID: WP_154114822.1
• Uniprot ID: -
• Organism: Vibrio cincinnatiensis strain F8054
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 414801..425790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX94_RS01900	cysP	414824..415825 (-)	1002	WP_154114819.1	thiosulfate ABC transporter substrate-binding protein CysP	-
GPX94_RS01905	cysM	416041..416931 (+)	891	WP_154114820.1	cysteine synthase CysM	-
GPX94_RS01910	mutS	417155..419737 (+)	2583	WP_078927352.1	DNA mismatch repair protein MutS	-
GPX94_RS01915	rpoS	419801..420790 (-)	990	WP_154114822.1	RNA polymerase sigma factor RpoS	Regulator
GPX94_RS01920	nlpD	420857..421792 (-)	936	WP_195707300.1	murein hydrolase activator NlpD	-
GPX94_RS01925	-	421804..422430 (-)	627	WP_078927349.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPX94_RS01930	surE	422435..423190 (-)	756	WP_078927348.1	5'/3'-nucleotidase SurE	-
GPX94_RS01935	truD	423183..424229 (-)	1047	WP_154114824.1	tRNA pseudouridine(13) synthase TruD	-
GPX94_RS01940	ispF	424275..424754 (-)	480	WP_078927346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPX94_RS01945	ispD	424751..425452 (-)	702	WP_154114825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPX94_RS01950	ftsB	425452..425733 (-)	282	WP_078927364.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37781.67 Da
• Isoelectric Point: 4.5903

>NTDB_id=408855 GPX94_RS01915 WP_154114822.1 419801..420790(-) (rpoS) [Vibrio cincinnatiensis strain F8054]
MSISNTTVTKVEDFDFDPEVFNALESDSVIEQPPTHTNLREEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDDAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQRLDHEPTAEEIAAELDKPVDDVNKMLRLNERISSVDTPIGGDGDKALLDILPDANNSD
PEFSIQDDDIRDSLVNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNME
ALFTIEHDG

Nucleotide

• Length: 990 bp

>NTDB_id=408855 GPX94_RS01915 WP_154114822.1 419801..420790(-) (rpoS) [Vibrio cincinnatiensis strain F8054]
ATGAGTATCAGCAATACAACAGTAACTAAAGTCGAAGATTTTGATTTTGACCCCGAGGTTTTCAATGCTCTAGAGTCTGA
CTCTGTGATTGAACAGCCACCTACCCACACTAACCTCCGAGAAGAGTATGACGCATCAAGCAAAAGCTTAGATGCAACAC
AAATGTACCTAAGTGAAATCGGTTTTTCGCCTTTGCTGACGGCTGAAGAAGAAGTTCTCTACGCACGGCGAGCATTGCGG
GGCGATGATGCCGCTCGTAAACGTATGATTGAAAGTAACCTACGGTTAGTGGTGAAAATTTCCCGCCGCTACAGTAACCG
AGGGCTCGCTTTATTGGATTTAATTGAAGAAGGTAACTTAGGGTTAATCCGAGCGGTAGAAAAATTTGATCCAGAACGTG
GTTTTCGTTTTTCAACCTATGCGACTTGGTGGATTCGGCAAACGATAGAACGTGCATTGATGAACCAAACTCGTACGATC
CGTCTACCCATTCATGTGGTTAAAGAGCTGAATATTTACTTACGTACAGCACGTGAACTTTCCCAACGTTTGGATCATGA
ACCGACCGCAGAAGAAATTGCGGCAGAACTGGATAAACCCGTGGATGATGTCAATAAAATGCTGCGCTTAAATGAACGTA
TTAGTTCGGTAGACACCCCCATTGGTGGGGATGGAGACAAAGCGTTGCTGGATATTTTACCGGATGCAAATAATTCTGAT
CCTGAATTTTCGATACAAGATGATGATATTAGAGATTCGCTGGTTAACTGGCTAGATGAACTTAATCCGAAACAAAAAGA
GGTGCTTGCGCGGCGTTTCGGTTTACTGGGCTATGAACCATCAACTCTTGAAGAAGTTGGGAGAGAAATAAGCCTAACTC
GTGAGCGAGTGAGGCAGATCCAAGTTGAGGGGCTGCGCCGTTTACGCGAAATCTTACTCAAACAAGGGTTGAATATGGAA
GCTTTGTTTACTATTGAGCATGATGGATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	85.97	100	0.875