Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPX94_RS01775 Genome accession   NZ_CP046848
Coordinates   393585..394103 (-) Length   172 a.a.
NCBI ID   WP_154114811.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 388585..399103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS01750 rimM 388739..389293 (-) 555 WP_078925564.1 ribosome maturation factor RimM -
  GPX94_RS01755 rpsP 389312..389560 (-) 249 WP_078925563.1 30S ribosomal protein S16 -
  GPX94_RS01760 ffh 389816..391192 (-) 1377 WP_078925562.1 signal recognition particle protein -
  GPX94_RS01765 - 391404..392198 (+) 795 WP_078925561.1 inner membrane protein YpjD -
  GPX94_RS01770 - 392247..393524 (+) 1278 WP_078925560.1 CNNM domain-containing protein -
  GPX94_RS01775 luxS 393585..394103 (-) 519 WP_154114811.1 S-ribosylhomocysteine lyase Regulator
  GPX94_RS01780 gshA 394217..395785 (-) 1569 WP_154114812.1 glutamate--cysteine ligase -
  GPX94_RS01785 - 396006..398858 (-) 2853 WP_154114813.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19066.94 Da        Isoelectric Point: 5.2188

>NTDB_id=408852 GPX94_RS01775 WP_154114811.1 393585..394103(-) (luxS) [Vibrio cincinnatiensis strain F8054]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNKAILSEKGIHTLEHLYAGFMRDHLNSDIVEIIDISP
MGCRTGFYMSLIGTPSEEQVAHAWLAAMNDVLKVESQDKIPELNEYQCGTAAMHSLSEAKAIAQQVIQSGIRVNKNDELA
LPEAMLQSLKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408852 GPX94_RS01775 WP_154114811.1 393585..394103(-) (luxS) [Vibrio cincinnatiensis strain F8054]
ATGCCATTACTAGACAGTTTTACGGTTGACCATACTCGTATGCAGGCTCCTGCAGTGCGAGTAGCTAAGACAATGCAAAC
CCCCAAAGGTGATACGATTACGGTGTTTGATTTACGTTTTACGTTACCCAATAAAGCGATTTTATCTGAAAAAGGGATTC
ACACGCTGGAGCATTTATATGCCGGATTCATGCGCGACCACCTCAATAGCGATATTGTAGAAATTATTGATATTTCTCCA
ATGGGGTGCCGAACGGGTTTTTATATGAGCTTAATTGGTACACCGAGTGAAGAGCAGGTTGCCCATGCCTGGCTCGCCGC
AATGAATGATGTGCTTAAGGTGGAAAGCCAAGATAAGATTCCTGAGTTAAATGAGTACCAATGTGGCACGGCCGCTATGC
ATTCTTTATCGGAAGCAAAAGCGATCGCCCAACAAGTTATTCAGTCTGGAATTCGAGTGAATAAAAATGACGAGTTGGCT
CTACCTGAAGCTATGCTTCAGTCATTAAAAGTCGATTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment