Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY12_RS13965 Genome accession   NZ_CP046846
Coordinates   3030717..3031724 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio mimicus strain F9458     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3025717..3036724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS13940 rraA 3026315..3026830 (-) 516 WP_000456240.1 ribonuclease E activity regulator RraA -
  GPY12_RS13945 - 3026905..3027822 (-) 918 WP_005512015.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY12_RS13950 hslU 3027929..3029260 (-) 1332 WP_001293363.1 HslU--HslV peptidase ATPase subunit -
  GPY12_RS13955 hslV 3029303..3029854 (-) 552 WP_000208246.1 ATP-dependent protease subunit HslV -
  GPY12_RS13960 - 3029996..3030547 (-) 552 WP_148545379.1 SPOR domain-containing protein -
  GPY12_RS13965 cytR 3030717..3031724 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  GPY12_RS13970 priA 3032030..3034234 (-) 2205 WP_001247895.1 primosomal protein N' -
  GPY12_RS13975 rpmE 3034489..3034707 (+) 219 WP_000643443.1 50S ribosomal protein L31 -
  GPY12_RS13980 - 3035017..3036294 (+) 1278 WP_001278593.1 malic enzyme-like NAD(P)-binding protein -
  GPY12_RS13985 metJ 3036393..3036710 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=408841 GPY12_RS13965 WP_000224452.1 3030717..3031724(-) (cytR) [Vibrio mimicus strain F9458]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408841 GPY12_RS13965 WP_000224452.1 3030717..3031724(-) (cytR) [Vibrio mimicus strain F9458]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCCGGAGTCTCAACCGCGACCGTGTCTCGTGCGTTGATGAACCCTGAAAA
AGTCTCCTCATCAACTCGTAAACGAGTGGAAGAGGCGGTGCTGGAAGCGGGTTACTCACCAAATTCTTTAGCGCGCAATT
TGCGCCGCAATGAGTCAAAAACCATCGTTGCTATTGTTCCTGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGACGCGGCGATGGAGCACGGCTATTTGGTGTTGTTGGGTGACAGTGGTCAACAAAAGCGTCGGGAGAATTCCTT
TGTAAACCTTGTGTTTACTAAACAAGCCGATGGCATGTTACTGCTGGGTACAGATTTACCGTTTGATGTGAGTAAGCCTG
AACAGAAAAATCTGCCGCCTATGGTGATGGCGTGTGAATTTGCTCCTGAGCTTGAATTACCGACGGTGCATATCGATAAC
CTGACTTCTGCATTTGAAGCGGTGAACTATCTGACTCAGCTTGGGCATAAGCGCATTGCGCAGATCTCTGGCCCACAACA
TGCAGCATTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACTATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGCCAGTTACTGGCGTTGCCAGAGCAGCCAACCGCC
ATTTTCTGTCACAATGATACGATGGCGATTGGGGCGATTCAGGAAGCTAAACGACTGGGTCTGCGAGTACCGCAAGATCT
CTCCGTCGTCGGCTTTGATGATATTCAGTTTGCTCAGTACTGTGATCCACCGCTGACCACTATCTCGCAACCTCGTTATG
AAATTGGTCGCCAAGCCATGCTGATGATGTTAGAGCTACTGCGTGGGCATGATGTACGTGCCGGGTCTCGCTTGCTTGAA
ACCAAACTCGTGGTACGTGAGAGTGCTGCGCCGCCAAGCAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment