Detailed information NTG0408832

Bioinformatically predicted

Overview

• Name: tfoS
• Type: Regulator
• Locus tag: GPY12_RS11080
• Genome accession: NZ_CP046846
• Coordinates: 2429439..2432786 (-)
• Length: 1115 a.a.
• NCBI ID: WP_187377649.1
• Uniprot ID: -
• Organism: Vibrio mimicus strain F9458
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2424439..2437786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY12_RS11060	-	2424634..2426019 (-)	1386	WP_158139366.1	IS4 family transposase	-
GPY12_RS11065	-	2426170..2426400 (-)	231	WP_148535707.1	FeoC-like transcriptional regulator	-
GPY12_RS11070	feoB	2426397..2428673 (-)	2277	WP_148547067.1	Fe(2+) transporter permease subunit FeoB	-
GPY12_RS11075	-	2428670..2428900 (-)	231	WP_005512398.1	ferrous iron transport protein A	-
GPY12_RS11080	tfoS	2429439..2432786 (-)	3348	WP_187377649.1	AraC family transcriptional regulator	Regulator
GPY12_RS11085	znuA	2432987..2433871 (-)	885	WP_148547069.1	zinc ABC transporter substrate-binding protein ZnuA	-
GPY12_RS11090	znuC	2433954..2434742 (+)	789	WP_005522648.1	zinc ABC transporter ATP-binding protein ZnuC	-
GPY12_RS11095	znuB	2434735..2435517 (+)	783	WP_148535711.1	zinc ABC transporter permease subunit ZnuB	-
GPY12_RS11100	sucD	2435605..2436477 (-)	873	WP_000025474.1	succinate--CoA ligase subunit alpha	-
GPY12_RS11105	sucC	2436477..2437643 (-)	1167	WP_001048577.1	ADP-forming succinate--CoA ligase subunit beta	-

Sequence

Protein

• Length: 1115 a.a.
• Molecular weight: 126762.26 Da
• Isoelectric Point: 7.6038

>NTDB_id=408832 GPY12_RS11080 WP_187377649.1 2429439..2432786(-) (tfoS) [Vibrio mimicus strain F9458]
MLRTFLYGCLLNLIIPSLVLALDKSMSVFYPLPIQEQGRVIVAQNLYLGNDGGIWVHDVHGKVMYFDGQNILPRRGSVLP
QTSSHIVYANSAFWTFEQHELFRTYPGKPKELMISLTPGTQINQMGASNGMIWMTDSENFYSYEIRSGRMNSLSLHELYQ
LNSASAVVINDAQYMVSKWALATNVGVYLSEEHGFAHVKKSGKSYIQKLYFSHKRRELLVGSKHGAIVVDIENKRTLPEK
IGSSHVLSIAETEKEYWVGTEDGLYVYSIITGKVVQLESNNSGDYTLLGRKIYAMVNDFQGGMWIATDKGIFYYSLFGQQ
FTRYAAQTLSNDGNEAKLSKPKALNSAGDYLAITQQGLYNFNFSDELRKHLIYPGEINDFVISGDNVWIATKKGLIRYNL
NRRSVDTPQLPLSLLQTEVDHLTMDRNGNLWGSSSHQIWSFSPKDQTYTDYGSEWMVKKFSPSRITLLAAVEKGIVIGTE
HGAYSLFGKQIRFDFASHRYGEIIQAVEDADRHIWVVGSYGVFRWRKDQYEATPVELIEENIQPLCIAESKQGMWLVSSK
GISYYHLQGQLNKHFGAPYGLVSNEFLSSSCAVGGEQGSSSLIIGSQLGAVKANTEELAVSNVPNIQVMFSQVSVNHSTK
LLGYRMPEPLKIAYGDAISFQFGALPSSRNQSLEYKLNDDPHWQRFDWALLNFDQLLPGKYRLRVRSANPTQRYRTETLF
DFEVLQPWYMTPMAIVGYVVSLFSVLALAFWWRTRMMVKVNRKLKAQVDLKTSQLRHQSKIVLSNNHQLRKQLQLHHNIL
GKVLEGVDPLLRHLSSYAKVRGWSEFDIPFCKVKQELAQLHFMHRGDVEESKYHDLHLLIESALKSWQEEYSKAAIQLTY
SGETRFIEVRQFNLDVLFNAVLTDAIKRLYKHQELNIRLDIRDAHAVVVFSDYGAPIENIESVQVNLTGYGAYPLQELVT
RSGGELRVFALQERNIVELSWPLATLAELEPFKSDESESDVKPSIDAVDKEWLSKIEKLIEQNYSDPNFTTSSAAKSLFV
SERSLQRRFKAVTGKTFKESLNEVRLEKACQSLLAGAKIAQAAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDREA

Nucleotide

• Length: 3348 bp

>NTDB_id=408832 GPY12_RS11080 WP_187377649.1 2429439..2432786(-) (tfoS) [Vibrio mimicus strain F9458]
GTGTTGCGCACATTTTTATACGGCTGCTTGCTGAACCTCATTATTCCTTCACTGGTATTGGCGCTGGATAAGTCAATGTC
GGTATTTTATCCCTTGCCTATTCAAGAGCAGGGGAGAGTCATTGTCGCTCAAAATCTCTATCTTGGTAACGATGGAGGAA
TTTGGGTTCATGATGTCCATGGCAAGGTCATGTATTTTGATGGACAAAATATCCTGCCGCGACGTGGCTCGGTTCTACCT
CAAACCTCTAGCCATATTGTTTATGCGAATAGTGCTTTCTGGACTTTCGAGCAGCATGAACTGTTTAGGACCTATCCCGG
TAAACCCAAAGAGCTGATGATAAGCCTCACACCCGGTACCCAAATCAACCAGATGGGAGCGTCCAATGGCATGATTTGGA
TGACGGATAGTGAAAATTTTTATAGTTATGAGATTCGCAGTGGACGAATGAACTCTCTATCACTGCATGAGCTTTATCAG
CTCAATAGTGCGAGTGCCGTGGTGATTAATGATGCTCAATACATGGTTTCCAAATGGGCTTTGGCAACGAATGTTGGCGT
CTATTTATCTGAAGAGCACGGATTTGCACACGTTAAAAAATCAGGAAAGAGCTATATTCAAAAGCTGTATTTCTCACACA
AACGCCGAGAGTTGTTAGTAGGTTCAAAGCATGGCGCTATTGTTGTCGATATTGAAAATAAGCGTACGTTGCCCGAAAAA
ATTGGCTCCTCTCATGTCTTATCCATTGCGGAAACAGAAAAAGAGTACTGGGTTGGTACGGAAGACGGACTGTATGTTTA
CTCAATTATCACGGGTAAGGTGGTTCAGTTAGAGAGTAATAACAGCGGTGATTACACCTTATTGGGTAGAAAAATCTACG
CCATGGTGAACGATTTTCAAGGTGGCATGTGGATAGCAACAGATAAAGGGATCTTTTATTACTCATTATTTGGGCAACAA
TTCACCCGTTATGCCGCTCAGACTCTCTCAAACGATGGTAATGAAGCGAAGCTCAGTAAACCCAAGGCTTTGAATTCGGC
TGGTGACTATTTAGCCATAACACAGCAAGGCCTCTATAACTTCAATTTTTCCGATGAGTTGCGTAAACATCTGATTTATC
CCGGTGAGATTAATGACTTTGTCATATCGGGAGACAATGTTTGGATTGCGACAAAGAAAGGTTTAATTCGATATAACCTA
AACCGCCGCAGTGTTGATACTCCGCAATTGCCTCTCTCATTACTGCAAACGGAAGTCGATCACCTAACCATGGATAGGAA
TGGGAACCTGTGGGGATCGAGCAGTCATCAGATCTGGTCATTCTCACCTAAGGATCAAACCTATACGGATTATGGTTCAG
AGTGGATGGTTAAGAAGTTTTCGCCTTCGCGAATCACTCTACTTGCTGCTGTGGAAAAAGGCATTGTGATTGGCACAGAA
CATGGTGCTTATTCTTTGTTCGGTAAACAGATTCGCTTTGATTTTGCTAGTCACCGTTATGGTGAAATTATCCAAGCGGT
AGAAGATGCGGATCGACACATCTGGGTGGTTGGATCGTATGGCGTTTTTCGTTGGCGTAAAGATCAATACGAGGCGACTC
CAGTAGAGCTCATCGAGGAGAATATTCAACCTTTGTGCATTGCTGAATCAAAGCAAGGCATGTGGCTTGTCTCTTCTAAA
GGCATCAGTTATTACCACCTTCAAGGCCAATTGAACAAACACTTTGGTGCTCCTTATGGCTTGGTCAGTAATGAATTTTT
ATCTTCATCTTGTGCTGTAGGTGGTGAACAAGGCTCTTCCTCACTCATCATAGGTTCACAACTCGGTGCTGTTAAAGCGA
ATACTGAGGAATTAGCGGTTTCCAATGTGCCGAATATTCAGGTGATGTTTAGCCAAGTGAGCGTTAATCACAGCACCAAG
TTGCTGGGTTATCGCATGCCGGAACCGCTGAAAATTGCTTATGGTGATGCGATTAGCTTCCAGTTTGGAGCTTTGCCTTC
TTCGAGAAATCAGTCTTTAGAATACAAGCTTAATGATGATCCACATTGGCAGCGTTTTGATTGGGCATTACTGAACTTTG
ACCAACTCTTACCCGGAAAATATCGTTTGAGAGTACGCAGTGCAAACCCAACTCAACGATACCGTACTGAAACATTATTT
GATTTTGAAGTTTTGCAGCCTTGGTATATGACCCCGATGGCCATCGTTGGTTATGTTGTGAGTCTTTTTAGCGTATTGGC
TCTGGCTTTTTGGTGGCGTACGAGAATGATGGTGAAGGTTAACCGGAAATTAAAAGCACAGGTTGATCTAAAAACCAGTC
AATTACGCCATCAGAGCAAGATTGTATTGAGTAATAACCATCAACTCCGTAAGCAACTCCAACTGCACCACAACATCCTT
GGTAAAGTTCTGGAAGGGGTTGACCCTTTACTGCGTCATTTGTCCTCTTATGCGAAAGTTCGTGGGTGGAGTGAGTTTGA
CATTCCTTTCTGTAAAGTGAAGCAGGAACTCGCTCAACTTCATTTTATGCACCGAGGTGATGTTGAAGAGAGTAAATATC
ACGATTTGCATCTATTGATCGAATCAGCATTAAAGAGTTGGCAGGAAGAATATAGCAAAGCCGCAATTCAACTGACTTAT
AGTGGTGAAACTCGGTTTATTGAAGTCCGTCAATTTAATCTTGACGTCTTGTTCAATGCCGTATTAACCGATGCCATAAA
GCGGCTGTATAAACACCAAGAGTTGAATATACGCCTTGATATTAGGGATGCTCATGCTGTTGTCGTATTTTCCGACTATG
GAGCACCGATAGAAAACATCGAATCGGTTCAAGTGAACTTGACTGGTTATGGAGCCTATCCACTGCAAGAGTTAGTAACT
CGAAGTGGAGGAGAGTTGAGAGTCTTTGCACTGCAAGAGCGTAATATTGTCGAGCTTTCCTGGCCGTTAGCGACTCTTGC
TGAACTTGAGCCATTTAAGTCAGATGAAAGCGAATCAGATGTAAAACCGAGCATTGATGCCGTAGATAAAGAGTGGTTAA
GTAAGATCGAGAAATTGATTGAACAGAACTACAGTGACCCTAATTTCACCACTTCAAGTGCTGCAAAATCCCTGTTTGTG
TCGGAGCGAAGTTTGCAACGCCGCTTTAAAGCGGTAACCGGTAAAACCTTTAAAGAATCTCTTAATGAAGTCAGATTAGA
AAAGGCATGTCAGAGTTTATTGGCTGGTGCCAAAATTGCTCAAGCTGCCTTTGACTGCGGATTTAATGACCCATCCTATT
TTAGCCAACGCTTCAAACACCATTTCGGATTATCACCAAGTCAATTCATCGAAGATCGAGAAGCCTAG

Domains

Predicted by InterproScan.

• Helix-turn-helix domain (HTH_18) (1035-1110)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tfoS	Vibrio cholerae O1 biovar El Tor strain E7946	80.897	100	0.809