Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SSUD12_RS05430 Genome accession   NC_017621
Coordinates   1079790..1083056 (-) Length   1088 a.a.
NCBI ID   WP_014638043.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1074790..1088056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS05420 (SSUD12_1063) plsY 1075374..1076018 (+) 645 WP_014638041.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  SSUD12_RS05425 (SSUD12_1064) rexA 1076140..1079790 (-) 3651 WP_014638042.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SSUD12_RS05430 (SSUD12_1065) rexB 1079790..1083056 (-) 3267 WP_014638043.1 ATP-dependent nuclease subunit B Machinery gene
  SSUD12_RS11695 (SSUD12_1066) - 1083164..1083328 (-) 165 WP_014638044.1 hypothetical protein -
  SSUD12_RS05440 (SSUD12_1067) obgE 1083858..1085171 (-) 1314 WP_014638045.1 GTPase ObgE -
  SSUD12_RS05445 (SSUD12_1068) - 1085375..1085503 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  SSUD12_RS05450 (SSUD12_1069) - 1085868..1087120 (+) 1253 Protein_1014 IS110 family transposase -

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124448.84 Da        Isoelectric Point: 5.1267

>NTDB_id=40883 SSUD12_RS05430 WP_014638043.1 1079790..1083056(-) (rexB) [Streptococcus suis D12]
MKLVYTDIRNPLTQYLTDIAAEFAKEGKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQP
LDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMESPDKQADLVKIFLAGTDILSK
EGFEHQSKLAQLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHIHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
ELDLFESYILFADMKGQVAFSRAFSVNGRADYDAEVIKEKRLVYDLAVLEPLRAKIMEPLNQLFKAGPQSGTALLEKFMA
FLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLDNEEWEGQRAFWTVLVRHLKKK
LESQGIEIPTITGEITSKQLSDETLAALYPEDMPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSIGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAILLKHNQALYKQAAMDILAGRFAINPY
TKDGRSVAGEQLKSITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=40883 SSUD12_RS05430 WP_014638043.1 1079790..1083056(-) (rexB) [Streptococcus suis D12]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACGCAGTATTTAACGGATATCGCAGCAGAATTTGCTAAGGAAGG
TAAGCGAGTTTTTTATATCGCTCCGAACTCTCTATCCTTTGAGATGGAGCGCAAGGTCTTGGAATACCTGCCTGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTAGCCCGCTATTTGATGATTGATAGGAAAGAAGCAGGTCAACCG
CTGGATGATGTTGGTCTTGCCATGATTTTCTTTCGTGTTCTATCGCAATTTGAAGATGGCGACTTGAAAGTCTATGGTCG
TTTGCAGACAGATTTTGGTTTCATTAACCAGCTAGTTGCTTTATACAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGAGTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGGAACAGACATTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTAGCACAGCTGACTAGCTTGGTGGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTGCTGGTGGTAGATGGATTTTCTCGTTTTTCGGCAGAAGAAGAAGCTTTAGTAAGTGCTTTAAATGAACGGGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCCACCTATGCGGAAGGCAATGTCTATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACTAAGGCTACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
TGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACCATGATAGACTTGACTCCAGCAGATCAAGAAA
AAATACAGCTATGGGAAGTCGTTAACCAAAAAGAAGAGGTGGAGCAGGTAGCAACGGCAATTCGCCAACACATACACCAA
GGAGCTCGCTATAAAGACATCTTGTTGCTCTTGGGTGATGTGGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
GTATGACATTCCTTACTATTTCGGTAAGGCAGAGGAGATGAGTCATCATCCGTTGGTCCATTTTGTGGAGTCCTTGGAGC
GCTTGCGTCGCTATCGTTTTCGTGCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTCTTTGCGGATATGAAGGGGCAGGTTGCTTTTTCGAGGGCTTTTTCGGTCAA
TGGCAGAGCAGACTATGATGCTGAAGTCATCAAGGAGAAGCGACTGGTCTATGATTTGGCTGTCTTGGAACCCCTACGGG
CTAAGATTATGGAGCCTTTGAACCAGCTGTTTAAGGCTGGACCACAATCTGGAACTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCAATTGATCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGTGAAGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATCTTCTCGAGAATTTTCATCAGATTTTCGGAAAAGAAAAATTGAAAATGGATGATT
TTCTGGCTATTTTACAGGCTGGAATGCAGGCCAGCCACTATCGTACCGTTCCTGCAACAGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATCGAGCCGCACACTGCTAAGTATGTTTATGCTATCGGAATGGGTCAGTCCAATTTTCCAAAAGTTGC
CAAGAATACCAGTCTATTGACTGAAGAAGAGATGGAAAAAGTTAATCTTGTCTCGGCTAGTTCCTCACGTTTCGATTTGG
TCAGCCGAGAGAATATCAAGAAGAACCATGCTGCCATGATGTCTCTGCTTAATGCTGCGACGGAACAGTTAGTCATTTCA
ACTCCTCAGATTTATAACGAAGGCGAAGACAGTCTCTCCCCATATATCAAGATTCTCCAAAAAATGGGGTTGAAATCCGA
AGAACGTGGTCGGATTAAAACACTTAGTCCGCAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCGG
AAAGACCATCTCTTGATAATGAAGAATGGGAAGGGCAGAGGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCATTACTGGCGAAATTACTTCTAAACAACTTTCAGATGAAACCTTGGCTGC
TTTATATCCAGAGGATATGCCACTCAATCTTTCTGCATCCAGCTTGACCAATTTTTACAACAACCAATATCTTTACTTTG
TCCGTAATGTTCTTCGCTTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGGATT
TTTGAACGAGTGGTCATGGACCAATCTGAGCTAGATTTTGATCAAAAAGTGGACAAGGCCATCCTGCGTACACGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAGGATGCGGACGCTCGCTATACGGAGGAGGTGCTGGATAAGATTGCTCGCTCCA
GTGCGACCATTTTGCGGGATAATGATTTGGTTGAAATTGATGGTCAGGAAAAGAGTTTCCGTCAGGATAAGGCGCTAGTT
TTTGACCTTCAGAATGGCAAGAGTGTGCATGTAAATGGTACCATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTAGATTACAAGTCCAGTGACCAAAGCTTTTCGATTGGGGATTTTTACAATGGTCTTAAACCTCAGTTGGTAA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGAGCCATGTATTTGCATTTGCAGGAT
CCGATTATCAAATTAAAGGATACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACTAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTCAATCATTTTTATCAGACTCGCAACCAACTCTATACGGAAGATGAGTTTGCGA
TTTTATTGAAACACAACCAAGCACTCTACAAACAAGCTGCCATGGACATTCTGGCTGGTCGCTTTGCTATTAATCCTTAT
ACCAAAGATGGCCGTTCGGTGGCAGGTGAGCAGCTGAAGTCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTAGTCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1041)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.878

100

0.455

Multiple sequence alignment